PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g030400.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 556aa    MW: 60281.2 Da    PI: 7.8433
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g030400.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.51.2e-11203259155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Csa18g030400.1 203 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 259
                     57*******************5444.2455536655.779999**************98 PP
2AP246.31.1e-14304353355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Csa18g030400.1 304 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 353
                     9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.32E-15203269IPR016177DNA-binding domain
PfamPF008474.1E-9203259IPR001471AP2/ERF domain
CDDcd000187.42E-20203269No hitNo description
PROSITE profilePS5103217.477204267IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-12204268IPR001471AP2/ERF domain
SMARTSM003802.2E-23204273IPR001471AP2/ERF domain
PRINTSPR003673.0E-6205216IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18302363IPR016177DNA-binding domain
CDDcd000183.88E-25302363No hitNo description
PROSITE profilePS5103219.203303361IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-18303361IPR001471AP2/ERF domain
SMARTSM003803.7E-33303367IPR001471AP2/ERF domain
PfamPF008471.5E-9304353IPR001471AP2/ERF domain
PRINTSPR003673.0E-6343363IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MKNNNNKSSS SSSYDSSLSP SSSSSSHQNW LSFSLSNNNN NNFNSSSNPN LTSSTSDHQH  60
PHPSHLSLFQ AFSTSPVERQ DGSPGVSTGD ATAVLSIYPG GPKLENFLGG GATTTTTRPM  120
QQMQSLGGVV FSSDLQPPLH PPSAAEIYDS ELKSIAASFL GKYSGGHSSE VSSVHKQQQN  180
PLVVPETSPT PKKSVESFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG QSRKGRQGGY  240
DKEEKAARAY DLAALKYWGP TTTTNFPISN YESELEEMKH MTRQEFVASL RRKSSGFSRG  300
ASMYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF  360
DISRYDVKSI ASCNLPVGGL MPKPSQPTAT TTADKTVDLT PSEPPSLTTP SLTFDVATPV  420
HDHGGTFYNT GIPIKPDPAD HYWSNVFGFQ QANTKAEMRP LATFGSDLHN PCPGYAIMPI  480
MQEGENNFGG GYVGSEGYNN HSVASNPVSA IPLSSTTTTM GNGNEGYWIN NNISSSYQNA  540
KSNLSVLQTP VFGLE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g030400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5856850.0AY585685.1 Arabidopsis thaliana clone at5g57390 AP2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483252.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ30.0AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLR0EWC30.0R0EWC3_9BRAS; Uncharacterized protein
STRINGXP_010483252.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115832833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.10.0AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]