PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g031240.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 720aa    MW: 79990.8 Da    PI: 6.1064
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g031240.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.72.3e-27249302155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W++eLH++Fv+av+qL G +kA+Pk+il+lm+++gLt+e+v+SHLQ+ Rl
  Csa18g031240.1 249 KPRVVWSQELHQKFVNAVQQL-GLDKAVPKKILDLMNIEGLTRENVASHLQMVRL 302
                     79*******************.******************************997 PP
2Response_reg54.95.1e-19641751109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEE....EEESTTTHHHHHHH CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpii....vvtahgeeedalea 89 
                     vl vdD+p+ ++ l+++l + +y +v+ + ++++ale+l+e+   +Dl++ D+emp+ dG++ll+   e +  lp+i    +++ah++ + + + 
  Csa18g031240.1  64 VLAVDDNPTCLRKLEELLLRCKY-HVTKTMESRKALEMLRENSnmFDLVISDVEMPDTDGFKLLEIGLEMD--LPVIstslLLSAHSDYDSVMKG 155
                     799********************.***************999999*******************8645555..55543333789*********** PP

                     HHTTESEEEESS--HHHHHH CS
    Response_reg  90 lkaGakdflsKpfdpeelvk 109
                     +  Ga d+l+Kp+  +el +
  Csa18g031240.1 156 IIHGACDYLVKPVGLKELQN 175
                     **************999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.2E-3061202No hitNo description
SuperFamilySSF521722.13E-2661183IPR011006CheY-like superfamily
SMARTSM004482.0E-2162177IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011032.61463181IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.4E-1764175IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.88E-1786180No hitNo description
PROSITE profilePS512949.202246307IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-27247303IPR009057Homeodomain-like
SuperFamilySSF466898.96E-17247303IPR009057Homeodomain-like
TIGRFAMsTIGR015578.6E-25249302IPR006447Myb domain, plants
PfamPF002493.8E-8251300IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
TLVVSFFQTP PGFKNKQIRL KSLCTISFGE ENRREETCRS IASGMELKST ADGRNDKFPV  60
GMRVLAVDDN PTCLRKLEEL LLRCKYHVTK TMESRKALEM LRENSNMFDL VISDVEMPDT  120
DGFKLLEIGL EMDLPVISTS LLLSAHSDYD SVMKGIIHGA CDYLVKPVGL KELQNIWHHV  180
VKKNIKSYAK TIGPSRQLLP PSESDLVPSV SKKRKEKVND SGDEDDSDRD EDDGEGSEQD  240
GDESGARKKP RVVWSQELHQ KFVNAVQQLG LDKAVPKKIL DLMNIEGLTR ENVASHLQMV  300
RLVXRLVFLW FWLQKYRLYL KKIDEGQQQN MTPDAFGTRD SSYFHMAQLD GFRDFTGTRQ  360
LPSSGLLSRS HLTKLQPHMY PSVNLQGMNS SSFIQQGHHQ SSSNSANPFG TYHSTLAPRI  420
QNVNLFQRTS SPLEPLQFPR SKCSAYTGDF KSIGDRAIGG SFLDSCMPFG SSSTSLPSAS  480
SNTLMSQANY TQPLHTASSG NQSCIEGTMS DSASQNISVQ GLSRFPSQSW QGNLNTTRFL  540
SNSLPINHAF LPDQVTCAGN NLGDCTSLVS AENPGGEMQC EPQLLGGFMQ NMNPIDGQKW  600
EQQNCGMLNN STFGNVEYPL PGDNMVFRGN NATRNKGLDV SLMSPIDNSA NVNSQEYVGK  660
PSRMVDPEMK LGKAENAQVD NQNQHDVFDD IMNEMMKQEE NNGMVSVATR FGFDSFPPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-21246307263ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g031240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240290.0AB024029.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L19.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483380.10.0PREDICTED: two-component response regulator ARR18
SwissprotQ9FGT70.0ARR18_ARATH; Two-component response regulator ARR18
TrEMBLR0EV990.0R0EV99_9BRAS; Two-component response regulator
STRINGXP_010483380.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142821823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.10.0response regulator 18