PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g031260.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 231aa    MW: 25765.2 Da    PI: 9.7193
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g031260.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like69.74.6e-222572250
         G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHL 50
                     r+ W+peLH++F++a+eqL G +kA+Pk+il lm+v+gLt+e+v+ HL
  Csa18g031260.1 25 VRVAWSPELHQKFLNAIEQL-GDHKAIPKQILALMNVEGLTRENVANHL 72
                    699*****************.9**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.6442180IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-192272IPR009057Homeodomain-like
SuperFamilySSF466891.4E-112474IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-192574IPR006447Myb domain, plants
PfamPF002492.8E-72674IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGDFKSIKDP AVSEESSTRK KKHRVRVAWS PELHQKFLNA IEQLGDHKAI PKQILALMNV  60
EGLTRENVAN HLHVLIISHS LLHLEVFQLD AEMNYRLHDL KRKTNKLNMG QLDGLININA  120
TSSALLSGSH LPKTPSINLE KMNVSSFIQQ GHHQNSSNSA NPSGAYHSTQ SPSVQNVNQY  180
QPSSSPLNPL LFPMINVSPY MADYKGIKEF PNITKSEQDG SVYRKLHNSD *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g031260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453160.13e-53PREDICTED: two-component response regulator ARR18-like
RefseqXP_010453169.13e-53PREDICTED: two-component response regulator ARR18-like
SwissprotQ9FGT79e-51ARR18_ARATH; Two-component response regulator ARR18
TrEMBLR0EV993e-51R0EV99_9BRAS; Two-component response regulator
TrEMBLR0EW392e-51R0EW39_9BRAS; Two-component response regulator
TrEMBLR0GL803e-51R0GL80_9BRAS; Two-component response regulator
STRINGXP_010485212.11e-149(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2319824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.11e-44response regulator 18