PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g032080.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 292aa    MW: 31713.3 Da    PI: 6.6283
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g032080.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-14145189347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
   Csa18g032080.1 145 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 189
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.4093186IPR017884SANT domain
SMARTSM007171.4E-73284IPR001005SANT/Myb domain
CDDcd001675.54E-73581No hitNo description
SuperFamilySSF466898.25E-103588IPR009057Homeodomain-like
PROSITE profilePS5129420.772138194IPR017930Myb domain
SuperFamilySSF466897.25E-17140193IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-17141193IPR006447Myb domain, plants
SMARTSM007173.2E-13142192IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-12142189IPR009057Homeodomain-like
CDDcd001672.11E-11145190No hitNo description
PfamPF002495.0E-13145189IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEVLRPTTSH VSGGNWLMED TKSNAGVAAS GEGCTWTAAE NKAFENALAV YDDNTPDRWQ  60
KVAAVIPGKT VSDVIRQYND LEADVSSIEA GLIPVPGYVT SPFTLDWAGG GGSGGCNGFK  120
PGHSVCYKRS SAGRSPELER KKGVPWTEEE HKLFLMGLKK YGKGDWRNIS RNFVITRTPT  180
QVASHAQKYF IRQLSGGKDK RRASIHDITT VNLEDEASLE SNKSSIVVGE QRSRLTLFPW  240
NETDNNGTHA DAFNITIGNA ISGVHSYGQV MLGGFNNADS CYDAQNTMFQ L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-1828101376RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00568DAPTransfer from AT5G58900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g032080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1188910.0AK118891.1 Arabidopsis thaliana At5g58900 mRNA for putative I-box binding factor, complete cds, clone: RAFL21-22-M07.
GenBankAY5195330.0AY519533.1 Arabidopsis thaliana MYB transcription factor (At5g58900) mRNA, complete cds.
GenBankBT0054730.0BT005473.1 Arabidopsis thaliana clone U51211 putative I-box binding factor (At5g58900) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483499.10.0PREDICTED: transcription factor DIVARICATA-like isoform X1
SwissprotQ8S9H71e-104DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLR0GRH60.0R0GRH6_9BRAS; Uncharacterized protein
STRINGXP_010483499.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122827100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.10.0Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]