PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g032750.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 612aa    MW: 69425.1 Da    PI: 6.1296
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g032750.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS392.25.9e-1202255991374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfs 94 
                     l++lL++cA+av+s d+++a + L +++ ++s++gd +qRla+yf+ AL+ar+++   + ++  +p+s+ts   +++ l+a+klf++++ i+   
  Csa18g032750.1 225 LRSLLTQCAQAVASFDQRRAAEKLMEIRSHSSSSGDGTQRLAFYFADALEARITGnIAPPVSTPFPSSTTS---MVDILKAYKLFVHTCSIYVTD 316
                     6899***************************************************6777777777777777...********************* PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                     +++aN+ I+e + +++++Hi+Df++ +G+QWp+Ll aL++Rp+gpp+lR+Tg++ p+sg   ++++eetg+rL++f+++++vpfefn+ +ak++e
  Csa18g032750.1 317 YFAANKSIYELALKATTLHIVDFGVLYGFQWPCLLLALSKRPGGPPKLRVTGIELPQSGfrPSDRVEETGRRLKRFCDKFNVPFEFNF-IAKKWE 410
                     **********************************************************9*****************************.7***** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..e 280
                     +++l+e+ ++pgE+++Vn++++l++++de+vsl+s+rd+vLkl+++++P+++v++e +  +ns+ F++rf eal ++s+lfd++++++ +e+  +
  Csa18g032750.1 411 SISLDEIVINPGETTVVNCIHRLQYTPDETVSLDSPRDTVLKLFRDINPDLFVFAEINGMYNSPFFMTRFREALFHFSSLFDMFDTTIQAEDeyK 505
                     ***************************************************************************************99998899 PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +r+ +E+ell r++++v++cegaer++r et+++Wr r+ +aGFkp+++s++++k+ak ++rk + + + ++++++++++gWk+r ++++S+W+
  Csa18g032750.1 506 NRALLEKELLVRDAMSVISCEGAERFARPETYKQWRVRILRAGFKPATISKQIMKEAKEIVRKRYHRDFVIDSDNNWMLQGWKGRVIYAFSCWK 599
                     *****************************************************************999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.032199579IPR005202Transcription factor GRAS
PfamPF035142.0E-117225599IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MDALLQVSVD GFRFENGSGS CCKPRNNLES GNNLFPSFHE PQTQSSSPND SPPSVCLDNS  60
PVLKYINDML MDEEDFVGES RDNLALQAAE RSFYEILQQQ SPESDHTTSS SSGDDPFFTS  120
ISTTTTSADS AALVSNGESH RKYRHRDDEE DDLETNRRNK QPAIFVSEME ELAVKFEHVL  180
LVCKANQEED ESSITKQQSQ QPNRVGRAKG SSNRSKTQKT NSVDLRSLLT QCAQAVASFD  240
QRRAAEKLME IRSHSSSSGD GTQRLAFYFA DALEARITGN IAPPVSTPFP SSTTSMVDIL  300
KAYKLFVHTC SIYVTDYFAA NKSIYELALK ATTLHIVDFG VLYGFQWPCL LLALSKRPGG  360
PPKLRVTGIE LPQSGFRPSD RVEETGRRLK RFCDKFNVPF EFNFIAKKWE SISLDEIVIN  420
PGETTVVNCI HRLQYTPDET VSLDSPRDTV LKLFRDINPD LFVFAEINGM YNSPFFMTRF  480
REALFHFSSL FDMFDTTIQA EDEYKNRALL EKELLVRDAM SVISCEGAER FARPETYKQW  540
RVRILRAGFK PATISKQIMK EAKEIVRKRY HRDFVIDSDN NWMLQGWKGR VIYAFSCWKP  600
AEKLTYNHVS I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4423160025380Protein SCARECROW
5b3h_A1e-4423160024379Protein SCARECROW
5b3h_D1e-4423160024379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g032750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256040.0AB025604.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F2O15.
GenBankAY0350010.0AY035001.1 Arabidopsis thaliana putative scarecrow 11 protein (At5g59450) mRNA, complete cds.
GenBankAY0629420.0AY062942.1 Arabidopsis thaliana putative scarecrow 11 protein (At5g59450) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483576.10.0PREDICTED: scarecrow-like protein 11
SwissprotQ9LTI50.0SCL11_ARATH; Scarecrow-like protein 11
TrEMBLA0A178UGG60.0A0A178UGG6_ARATH; Uncharacterized protein
STRINGXP_010483576.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]