PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g033820.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ZF-HD
Protein Properties Length: 203aa    MW: 22517.5 Da    PI: 9.3003
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g033820.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.72.1e-312076358
     ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                     v Y+eClkNhA+slGgha+DGCgEf+p++++  +++ +l+C ACgCHRnFHRr+++
  Csa18g033820.1 20 VVLYNECLKNHAVSLGGHALDGCGEFIPKSTTIlTDTPSLTCGACGCHRNFHRRSPS 76
                    689**************************99999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-32486IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.6E-262174IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.0E-312374IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.6082374IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.3E-24119185IPR009057Homeodomain-like
SuperFamilySSF466897.62E-15123185IPR009057Homeodomain-like
TIGRFAMsTIGR015652.3E-29128185IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MHYYSTITTN NIDTGAGDMV VLYNECLKNH AVSLGGHALD GCGEFIPKST TILTDTPSLT  60
CGACGCHRNF HRRSPSDVFS HCWSPPLQPL ASTPHLLLSL SSGFSGPSNQ EDKNKFTVAK  120
EDRSAMMKKR KRTKLTAEQK EKMRGFAERA GWKINGSDEK WVKEFCSEVG IEKQVLKVWI  180
HNNKYFSNGK NRDTTSSSSL KL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A7e-191271851674ZF-HD homeobox family protein
1wh7_A7e-191291841873ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127132KKRKRT
2127134KKRKRTKL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g033820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114831e-154AB011483.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUF9.
GenBankCP0026881e-154CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483696.11e-152PREDICTED: zinc-finger homeodomain protein 12-like
SwissprotQ9FKJ91e-110ZHD12_ARATH; Zinc-finger homeodomain protein 12
TrEMBLA0A178UPU61e-108A0A178UPU6_ARATH; ZHD12
STRINGXP_010483696.11e-151(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51662549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60480.11e-100homeobox protein 26