PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g034210.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 182aa    MW: 20892.2 Da    PI: 7.8807
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g034210.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.28.6e-1468128363
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     e +r+rr+ +NRe+ArrsR RKk++ieeL++ v++L   N+ L +++ +l +   ++ +e+
  Csa18g034210.1  68 EERRARRMVSNRESARRSRIRKKKQIEELQQQVEQLMMLNHHLSEKVINLLESNHQVLQEN 128
                     678*******************************************999999999888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.1E-1466130IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.2E-1167123No hitNo description
PfamPF001701.8E-1268128IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.19768131IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.0E-1170121No hitNo description
CDDcd147022.37E-1571122No hitNo description
PROSITE patternPS0003607388IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MDSGVHRSHC FDIFEGVPLQ DDHFNSAFLP NTDFNVQLQS ASTRSNNNQS QSDPNALNIF  60
HNEGLAPEER RARRMVSNRE SARRSRIRKK KQIEELQQQV EQLMMLNHHL SEKVINLLES  120
NHQVLQENSQ LKEKVSSFQL LMADVLIPMR NAESNINDRN VNHHLRGETS NRPTNNSPFG  180
K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g034210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0154721e-180AB015472.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAE1.
GenBankCP0026881e-180CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483738.11e-129PREDICTED: basic leucine zipper 43-like
TrEMBLR0EZJ91e-108R0EZJ9_9BRAS; Uncharacterized protein
STRINGXP_010483738.11e-129(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61852545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60830.17e-92basic leucine-zipper 70