PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g034970.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 322aa    MW: 35125.8 Da    PI: 9.7763
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g034970.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.4e-13109154247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+  ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky
   Csa18g034970.1 109 KPWTEEEHRNFLIGLNKLGKGDWRGIAKSFVTTRTPTQVASHAQKY 154
                      58*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.731225IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.267103159IPR017930Myb domain
SuperFamilySSF466897.9E-17105159IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-16106157IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.6E-11107153IPR009057Homeodomain-like
SMARTSM007174.2E-10107157IPR001005SANT/Myb domain
PfamPF002492.3E-11109154IPR001005SANT/Myb domain
CDDcd001677.77E-9110155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MVKETVTTAK TCSHCGHNGH KARTCLSGVS KGISVKLFGV NISSDPIRPP EVTALRKSLS  60
LGNLDALLAN DDSNGSGDPI AAVEDTGYHS DGQIHSKKCK TAHDKKKGKP WTEEEHRNFL  120
IGLNKLGKGD WRGIAKSFVT TRTPTQVASH AQKYFIRLNV NDKRKRRASL FDISLEDQEK  180
ERNSQGASTS SSQTLTNQLV TGSQQPVMQG QTQTEISNRF QNLSMEFMPV YQTVTGTPYY  240
NFAPLMIHPM YYANPEQIRF VHPSGIPVPR HVPMGMPQSQ PNEASNMMTK KDGLELGIGL  300
PPPPQATGAT DMTGNGVIPV K*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g034970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0122399e-96AB012239.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K11J9.
GenBankCP0026889e-96CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483843.10.0PREDICTED: uncharacterized protein LOC104762276
SwissprotQ9FKF90.0M5162_ARATH; Probable transcription factor At5g61620
TrEMBLR0F0T90.0R0F0T9_9BRAS; Uncharacterized protein
STRINGXP_010483843.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.11e-165MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]