PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g038450.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 244aa    MW: 26863.3 Da    PI: 10.0062
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g038450.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-202979256
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr+++ +g+W+AeIrd +     + +r++lg+f+ ae Aa+a+++a+++++g+
  Csa18g038450.1 29 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDNAESAARAYDEAALRFRGN 79
                    7********.**********66.....56*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-222988IPR016177DNA-binding domain
PROSITE profilePS5103225.1062986IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-322987IPR001471AP2/ERF domain
PfamPF008471.4E-132978IPR001471AP2/ERF domain
SMARTSM003808.4E-362992IPR001471AP2/ERF domain
PRINTSPR003672.4E-113041IPR001471AP2/ERF domain
CDDcd000182.79E-263788No hitNo description
PRINTSPR003672.4E-115268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSGPGPTYEY TATANSEASS FSGDQPRRRY RGVRQRPWGK WAAEIRDPFK AARVWLGTFD  60
NAESAARAYD EAALRFRGNK AKLNFPENVK LVRPASTAAA APQPQTAVQK PTQLRNSGST  120
TAPSPIRLDS DHNIPIHSQP STQPYNSSYS EMARQQQQFQ QHHHQQSMDL YNHISFPSRF  180
GHTGGSMMQS MSSSSSPSHS RPLFSSAAGQ PQPESASETG YLQDIQWPSD KTSNNNYNNS  240
PSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-233089666ATERF1
3gcc_A4e-233089666ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g038450.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010484270.11e-179PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1
RefseqXP_019096028.11e-179PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X2
SwissprotQ9FGF89e-89ABR1_ARATH; Ethylene-responsive transcription factor ABR1
TrEMBLI1W1I91e-96I1W1I9_BRAJU; AP2/EREBP protein
STRINGXP_010484270.11e-178(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91182137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.12e-63ERF family protein
Publications ? help Back to Top
  1. Choi DS,Hwang BK
    Proteomics and functional analyses of pepper abscisic acid-responsive 1 (ABR1), which is involved in cell death and defense signaling.
    Plant Cell, 2011. 23(2): p. 823-42
    [PMID:21335377]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  4. Sanyal SK, et al.
    Arabidopsis CBL interacting protein kinase 3 interacts with ABR1, an APETALA2 domain transcription factor, to regulate ABA responses.
    Plant Sci., 2017. 254: p. 48-59
    [PMID:27964784]
  5. Choi SW,Lee SB,Na YJ,Jeung SG,Kim SY
    Arabidopsis MAP3K16 and Other Salt-Inducible MAP3Ks Regulate ABA Response Redundantly.
    Mol. Cells, 2017. 40(3): p. 230-242
    [PMID:28292003]