PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g039070.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 326aa    MW: 36051.6 Da    PI: 6.2361
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g039070.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.17e-11236293156
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkklege 56 
                     s y+GV++++++gr++A+++d  +       rk  + g ++ +++Aa+a++ a++k++g+
  Csa18g039070.1 236 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWGH 293
                     57*******************4444.2344336655.7799999*************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.7E-9236293IPR001471AP2/ERF domain
CDDcd000188.33E-19236302No hitNo description
SuperFamilySSF541711.9E-14236301IPR016177DNA-binding domain
PROSITE profilePS5103216.95237300IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-11237301IPR001471AP2/ERF domain
SMARTSM003806.4E-20237306IPR001471AP2/ERF domain
PRINTSPR003673.5E-5238249IPR001471AP2/ERF domain
PRINTSPR003673.5E-5282302IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAPPPMTNLL TFSLSPMEML KSPDHSHFPP SPYDVSSTPY LIDNFYVFKE EAEEIEAAAS  60
SMAADSTTLS TFFDSQILSQ TQIPKLEDFL GDSFVRYSDD QTETQDGSSS SSSSPLTRFY  120
DLRHHTVTGG FFSDHHHQHD FKTVNSCSEI VVDDSASNIV ATRLSVQAAG KSSSTTAELG  180
FNNGGATTGE ALSLAVNNNT SDQPPQSNKK TSASTKKETS DDSKKKVVEP LGQRTSIYRG  240
VTRHRWTGRY EAHLWDNSCR REGQARKGRQ GGYDKEDKAA RAYDLAALKY WGHIATTNFP  300
VASYSKELEE MNHMTKQEFI ASLRR*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g039070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5608871e-119AY560887.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g65510) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010484346.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL7 isoform X1
SwissprotQ6J9N81e-150AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLR0EWM61e-170R0EWM6_9BRAS; Uncharacterized protein
STRINGXP_010484346.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.11e-135AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]