PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g039710.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 206aa    MW: 23733.1 Da    PI: 10.8153
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g039710.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1231.8e-0788148363
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     + +r +rk +NR +A+rsR +K++ +e  + k  +L+ +N++L ++      +++++k+e+
  Csa18g039710.1  88 DERRKKRKLSNRKSAQRSRIKKQKHLEDVRSKLNQLKFKNRELHNRRLYVLYHCERVKMEN 148
                     6689***************************************988887778888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.6E-882133No hitNo description
SMARTSM003385.1E-786150IPR004827Basic-leucine zipper domain
PfamPF077161.5E-487133IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.70388133IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.85E-790134No hitNo description
CDDcd147021.39E-1191130No hitNo description
PROSITE patternPS00036093108IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSTISPVLSS EPVLSNQVPA WETGFTPWDE SDIFSIFSSP VSPMEVNPGL DKTNPSPIQN  60
QRYSSPGLKD QQPLKNPTGS NVVSSVKDER RKKRKLSNRK SAQRSRIKKQ KHLEDVRSKL  120
NQLKFKNREL HNRRLYVLYH CERVKMENDR LRLEHHALHE KLLNLRQALA MRQIQQNSAC  180
ATWSCVNSTV VTVNRNHSMM RDHVI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18895ERRKKRKL
289110RRKKRKLSNRKSAQRSRIKKQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g039710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010484440.11e-151PREDICTED: basic leucine zipper 43-like
TrEMBLR0GTW01e-102R0GTW0_9BRAS; Uncharacterized protein
STRINGXP_010484440.11e-150(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33382665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.13e-45basic leucine-zipper 5