PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g040290.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 228aa    MW: 25922.9 Da    PI: 9.636
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g040290.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.12.1e-08100127133
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfsl 33 
                     s+y+GV++++++grW+++I+d      + k+++l
  Csa18g040290.2 100 SQYRGVTFYRRTGRWESHIWD------CgKQVYL 127
                     78*******************......5599987 PP
2AP229.12.5e-09187226144
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAak 44 
                     s+++GV+ +k  grW++++  +     + k+++lg f+t+ eAa+
  Csa18g040290.2 187 SKFRGVTLHK-CGRWESRLGQF----LNkKYVYLGLFDTEIEAAR 226
                     79********.7****995553....234**********99**97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-6100153IPR016177DNA-binding domain
CDDcd000181.47E-13101153No hitNo description
SMARTSM003801.3E-14101158IPR001471AP2/ERF domain
PROSITE profilePS510329.361101152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-6101152IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-8187226IPR016177DNA-binding domain
CDDcd000181.35E-12187226No hitNo description
PfamPF008471.1E-4187226IPR001471AP2/ERF domain
PROSITE profilePS510329.664188227IPR001471AP2/ERF domain
SMARTSM003802.8E-4188226IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-6188226IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MWNLNDSPDH HEASDSRGNR FGHVSNYMSQ STTWLSSVPP VTRNFFPSQV MEPGIYGSGF  60
NRSQGGGKSD PSGSGRPDEL APEISPPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD  120
CGKQVYLVTI CDSAYDRAAI KFRGVDADIN FDIEDYVDDL KQMGNLTKEE FMHVLRRQST  180
GFPRGSSKFR GVTLHKCGRW ESRLGQFLNK KYVYLGLFDT EIEAARY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g040290.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1761451e-130AK176145.1 Arabidopsis thaliana mRNA for floral homeotic protein apetala2-like, complete cds, clone: RAFL22-96-G17.
GenBankAY0882381e-130AY088238.1 Arabidopsis thaliana clone 4623 mRNA, complete sequence.
GenBankBT0292061e-130BT029206.1 Arabidopsis thaliana At5g67180 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010484535.11e-146PREDICTED: AP2-like ethylene-responsive transcription factor TOE3
SwissprotQ9FH951e-124TOE3_ARATH; AP2-like ethylene-responsive transcription factor TOE3
TrEMBLR0EWM51e-127R0EWM5_9BRAS; Uncharacterized protein
STRINGXP_010484535.11e-145(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67180.11e-121target of early activation tagged (EAT) 3
Publications ? help Back to Top
  1. Zumajo-Cardona C,Pabón-Mora N
    Evolution of the APETALA2 Gene Lineage in Seed Plants.
    Mol. Biol. Evol., 2016. 33(7): p. 1818-32
    [PMID:27030733]