PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g040420.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 146aa MW: 16533 Da PI: 10.2199

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g040420.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.6	1.7e-16	36	81	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR++iN+++ L++l+P++ K +Ka++L +A+eY+k+Lq Csa18g040420.1 36 HNLSEKRRRSKINEKMKALQKLIPNS-----NKTDKASMLDEAIEYLKQLQ 81 9**********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.971	31	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.29E-20	35	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.2E-14	36	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.01E-16	36	85	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.0E-20	36	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.1E-18	37	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MRREGFTYHH YAFVTPKRNG GRQKNSLKRN IDAHFHNLSE KRRRSKINEK MKALQKLIPN 60 SNKTDKASML DEAIEYLKQL QLQVQTLAVM NGLGLNPMGL PPVLPPTQTR NNETLDQDLN 120 LETLLAAPHS VEPPQEMCFS TATLL*

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the dehiscence of fruit, especially for the separation of the valve cells from the replum. Promotes the differentiation of a strip of labile nonlignified cells sandwiched between layers of lignified cells. {ECO:0000269\|PubMed:11747817}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g040420.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FR727240	1e-141	FR727240.1 Lepidium campestre mRNA for ALCATRAZ-like protein (alc gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010484550.1	2e-90	PREDICTED: transcription factor ALC-like
Swissprot	Q9FHA2	4e-75	ALC_ARATH; Transcription factor ALC
TrEMBL	D7MKT4	2e-77	D7MKT4_ARALL; Uncharacterized protein
STRING	XP_010485325.1	6e-91	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13982	17	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67110.1	2e-77	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Pabón-Mora N,Wong GK,Ambrose BA Evolution of fruit development genes in flowering plants. Front Plant Sci, 2014. 5: p. 300 [PMID:25018763] Pfannebecker KC,Lange M,Rupp O,Becker A Seed Plant-Specific Gene Lineages Involved in Carpel Development. Mol. Biol. Evol., 2017. 34(4): p. 925-942 [PMID:28087776] Zumajo-Cardona C,Ambrose BA,Pabón-Mora N Evolution of the SPATULA/ALCATRAZ gene lineage and expression analyses in the basal eudicot, Bocconia frutescens L. (Papaveraceae). Evodevo, 2017. 8: p. 5 [PMID:28331573] He H, et al. CELLULASE6 and MANNANASE7 Affect Cell Differentiation and Silique Dehiscence. Plant Physiol., 2018. 176(3): p. 2186-2201 [PMID:29348141]