PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g040520.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 173aa    MW: 18646.9 Da    PI: 9.3152
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g040520.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-16103153155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++ykGVr+++ +g W+AeI+dp     +   r +lg f tae+Aa+a+++a+ ++ g
  Csa18g040520.1 103 KKYKGVRRKP-SGNWAAEIWDP-----SmkERRWLGAFPTAEMAARAYDEAAAEIVG 153
                     59*****888.7*********9.....445999*******************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.04E-14103165No hitNo description
SMARTSM003801.1E-26104168IPR001471AP2/ERF domain
PfamPF008472.0E-10104153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-22104155IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-16104155IPR016177DNA-binding domain
PROSITE profilePS5103220.495104165IPR001471AP2/ERF domain
PRINTSPR003671.9E-6105116IPR001471AP2/ERF domain
PRINTSPR003671.9E-6127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MNSSKTDCSE NVLSNDQNEN VTAVASPPPP SSSYLTRDQE HGIMVSALRQ VISNSGGHTS  60
SSNLIVAEAA LPPPDAGPCP LCGVTGCYGC TFQRPRGEMR KEKKYKGVRR KPSGNWAAEI  120
WDPSMKERRW LGAFPTAEMA ARAYDEAAAE IVGRTSARRG TTNGEGFKRR RS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g040520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010484562.11e-126PREDICTED: ethylene-responsive transcription factor ERF122-like
SwissprotQ38Q405e-81EF122_ARATH; Ethylene-responsive transcription factor ERF122
TrEMBLR0F0669e-93R0F066_9BRAS; Uncharacterized protein
STRINGXP_010484562.11e-125(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67000.18e-70ERF family protein