PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g040770.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 69aa    MW: 7931.07 Da    PI: 6.7083
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g040770.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS64.12.8e-20168309374
            GRAS 309 hetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                     +e++e+Wr  +e+aGF++v+ls++a++qak ll +++ s  y++ e++  +v l W+d pL+++S+Wr
  Csa18g040770.1   1 MEQKEQWRVLMENAGFESVKLSNYAVSQAKILLWNYNySSLYSIVESKPGFVsLAWNDLPLLTISSWR 68 
                     6899*********************************9999*******99999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035149.3E-18168IPR005202Transcription factor GRAS
PROSITE profilePS5098510.069146IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MEQKEQWRVL MENAGFESVK LSNYAVSQAK ILLWNYNYSS LYSIVESKPG FVSLAWNDLP  60
LLTISSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-20168308375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g040770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0107009e-77AB010700.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUD21.
GenBankAY0625389e-77AY062538.1 Arabidopsis thaliana SCARECROW gene regulator (At5g66770; MUD21.1) mRNA, complete cds.
GenBankBT0025809e-77BT002580.1 Arabidopsis thaliana SCARECROW gene regulator (At5g66770) mRNA, complete cds.
GenBankCP0026889e-77CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010484588.15e-40PREDICTED: scarecrow-like protein 4 isoform X1
RefseqXP_010484589.15e-40PREDICTED: scarecrow-like protein 4 isoform X2
SwissprotQ9FL031e-39SCL4_ARATH; Scarecrow-like protein 4
TrEMBLA0A178US252e-37A0A178US25_ARATH; Uncharacterized protein
TrEMBLM4D6J32e-38M4D6J3_BRARP; Uncharacterized protein
STRINGXP_010484589.12e-39(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2949922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.14e-42GRAS family protein
Publications ? help Back to Top
  1. Wortman JR, et al.
    Annotation of the Arabidopsis genome.
    Plant Physiol., 2003. 132(2): p. 461-8
    [PMID:12805579]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]