PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g042280.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C3H

Protein Properties

Length: 442aa MW: 48303.9 Da PI: 9.5841

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g042280.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.7	3e-06	396	419	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+ff r C+ G++C + Hg+ Csa18g042280.1 396 KPCMFFNRPKGCRLGESCLYLHGR 419 69********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.371	392	420	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.16E-5	395	421	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.5E-4	396	420	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MKKKTSGRVS WASESRLCQV KMFLTEDCPA KVSSSNLLPP GFEATVFPST RNNNIPRIKW 60 KRPPKFIIND ALLVGSGGDS TETLSENLRI SKVLEAFYPH RSVIPTRPSV SSAVAEAHYD 120 DSTTPSIPLA FIEDEPEPPL QSSHDFNAVS LLGPQLSLAA SAALSSLTKE QGSQVDAHLL 180 VKLLSDPIIV HNLLNGKPLE TANHVTTPNT DFAKPTTRAM DTTNPPPPIG VPHNVPVSVQ 240 SCATDPPLPK PTLPMSTALS MKPPTLVVHT YPLSSGIKPL PRLEDSSYTA APLKPSPVDN 300 ALVSEQNKQQ PLNMSSTWDM NRGPESAAQT ETAPQIRNGN TNRDDQVSAE PVKNQDYYKN 360 LIREHGVVSP ATNENNNYKG RVDDNMKVVK VNKIQKPCMF FNRPKGCRLG ESCLYLHGRS 420 KRSWTDVAPR FPRAKRLKFG S*

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MKKKTSGRVS WASESRLCQV KMFLTEDCPA KVSSSNLLPP GFEATVFPST RNNNIPRIKW  60
KRPPKFIIND ALLVGSGGDS TETLSENLRI SKVLEAFYPH RSVIPTRPSV SSAVAEAHYD  120
DSTTPSIPLA FIEDEPEPPL QSSHDFNAVS LLGPQLSLAA SAALSSLTKE QGSQVDAHLL  180
VKLLSDPIIV HNLLNGKPLE TANHVTTPNT DFAKPTTRAM DTTNPPPPIG VPHNVPVSVQ  240
SCATDPPLPK PTLPMSTALS MKPPTLVVHT YPLSSGIKPL PRLEDSSYTA APLKPSPVDN  300
ALVSEQNKQQ PLNMSSTWDM NRGPESAAQT ETAPQIRNGN TNRDDQVSAE PVKNQDYYKN  360
LIREHGVVSP ATNENNNYKG RVDDNMKVVK VNKIQKPCMF FNRPKGCRLG ESCLYLHGRS  420
KRSWTDVAPR FPRAKRLKFG S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g042280.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB022211	1e-100	AB022211.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K1L20.
GenBank	AK117637	1e-100	AK117637.1 Arabidopsis thaliana At5g66270 mRNA for unknown protein, complete cds, clone: RAFL17-29-H06.
GenBank	BT005171	1e-100	BT005171.1 Arabidopsis thaliana clone U50458 unknown protein (At5g66270) mRNA, complete cds.
GenBank	CP002688	1e-100	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010484668.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 68-like
Swissprot	Q9FH61	0.0	C3H68_ARATH; Zinc finger CCCH domain-containing protein 68
TrEMBL	R0GJQ8	0.0	R0GJQ8_9BRAS; Uncharacterized protein
STRING	XP_010484668.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8704	11	12