PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa19140s010.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GRAS

Protein Properties

Length: 94aa MW: 10411.5 Da PI: 5.7534

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa19140s010.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	42.9	7.9e-14	2	66	12	73
GRAS 12 vssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetsekn 73 vs++++++aq+lL+ ls ++sp+gd+++Rl++ ft+AL+ r++r +++ +++++++ +++e++ Csa19140s010.1 2 VSQSNFTAAQNLLSVLSLNSSPYGDSTERLVHLFTKALSVRINRlqqEQDPTAETVATCTANEMT 66 89***************************************999421223344444444444333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	8.701	1	94	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.7E-11	2	66	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 94 aa Download sequence Send to blast
FVSQSNFTAA QNLLSVLSLN SSPYGDSTER LVHLFTKALS VRINRLQQEQ DPTAETVATC 60 TANEMTMGNN NSTVFTSSVC KEQFLFRTKN NNSD

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa19140s010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ303349	2e-90	AJ303349.1 Capsella rubella ORF1, ORF2, ORF3, ORF4, ORF5 and ORF6 (partial).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006392620.1	1e-41	scarecrow-like protein 18
Swissprot	Q9ZWC5	2e-38	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	V4MF51	3e-40	V4MF51_EUTSA; Uncharacterized protein
STRING	Bostr.6758s0017.1.p	3e-44	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11329	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	3e-40	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]