PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g003360.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 273aa    MW: 31485 Da    PI: 6.0456
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g003360.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.8e-1773125456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     + +++ eq+++Le+ Fe  +++  e++ +LAk lg++ rq+ +WFqNrRa++k
  Csa19g003360.1  73 KKRLQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWK 125
                     4457889*********************************************9 PP
2HD-ZIP_I/II123.31.2e-3971162192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekk+rl+ eqvk+LE+sFe  +kLeperK +la++Lg+qprq+a+WFqnrRAR+kt+qlE+dy++Lk+++++lk++n++L + +++L +e++
  Csa19g003360.1  71 EKKKRLQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERDYDSLKKQFESLKSDNDSLLAYNKKLLAEVM 162
                     69*************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.11567127IPR001356Homeobox domain
SuperFamilySSF466892.57E-1869129IPR009057Homeodomain-like
SMARTSM003894.6E-1670131IPR001356Homeobox domain
CDDcd000863.72E-1572128No hitNo description
PfamPF000461.1E-1473125IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-1875135IPR009057Homeodomain-like
PRINTSPR000312.9E-598107IPR000047Helix-turn-helix motif
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
PRINTSPR000312.9E-5107123IPR000047Helix-turn-helix motif
PfamPF021834.6E-14128167IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MAFPQHGFMF QQLHEDTSQD QLPSCPPHLF SGGGNYMMNR SMSLMNVQED HNQTLDEENL  60
SDDGAHTMLG EKKKRLQLEQ VKALEKSFEL GNKLEPERKI QLAKALGMQP RQIAIWFQNR  120
RARWKTRQLE RDYDSLKKQF ESLKSDNDSL LAYNKKLLAE VMALKNKECN EANIIKREAE  180
ASWSNNGSTE NSSDINLEMP REITTTHVNT IKDLFPSSIR SSAHRDNDDH HQNHEMVQEE  240
SLCNMFNGID ETTSAGYWAW SDPNHNHPHQ FN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g003360.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288900.0AK228890.1 Arabidopsis thaliana mRNA for putative homeobox-leucine zipper protein, complete cds, clone: RAFL16-20-K05.
GenBankAY0876310.0AY087631.1 Arabidopsis thaliana clone 3722 mRNA, complete sequence.
GenBankBT0292210.0BT029221.1 Arabidopsis thaliana At3g01220 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010485524.10.0PREDICTED: homeobox-leucine zipper protein ATHB-20-like
SwissprotQ8LAT00.0ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLD7LAH80.0D7LAH8_ARALL; ATHB20
STRINGXP_010485524.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.10.0homeobox protein 20