PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa19g006240.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 403aa MW: 45459.9 Da PI: 6.5793

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa19g006240.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.4	8e-34	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPkti+++m+++gLtl+h+kSHLQkYRl Csa19g006240.1 45 KPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.227	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-31	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.84E-17	44	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-23	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	4.7E-10	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-15	146	186	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MCYQNQHQGK NILSSSRMHI TTERNPFLRG NSPGESGLIL STDAKPRLKW TPDLHERFIE 60 AVNQLGGADK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS KNLNGQANSG LNKIGMMTMM 120 EEKTPDVDEI QSENLSIGPQ PNMNSPISEA LQMQIEVQRR LHEQLELRIE AQGKYLQSVL 180 EKAQETLGRQ NLGAAGIEAA KVQLSELVSK VSAEYPNSSF LEPKELQNLC PQQIQTTTYP 240 PDCSLESCLT SSEGTQKTLE NNRIGLRTYL GDSTSEQKEN IEEPLFQRME LTWTEGLRGN 300 NPYLSTMVSE TEQRIPYSER SPGRLSIGVG LLQGHKGHHH QQGNNEYTDE RFKDKSEDHK 360 FETRNHRKGM DSATELDLNT HVESYSTTTR TKQFDLNGFS WN*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MCYQNQHQGK NILSSSRMHI TTERNPFLRG NSPGESGLIL STDAKPRLKW TPDLHERFIE  60
AVNQLGGADK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS KNLNGQANSG LNKIGMMTMM  120
EEKTPDVDEI QSENLSIGPQ PNMNSPISEA LQMQIEVQRR LHEQLELRIE AQGKYLQSVL  180
EKAQETLGRQ NLGAAGIEAA KVQLSELVSK VSAEYPNSSF LEPKELQNLC PQQIQTTTYP  240
PDCSLESCLT SSEGTQKTLE NNRIGLRTYL GDSTSEQKEN IEEPLFQRME LTWTEGLRGN  300
NPYLSTMVSE TEQRIPYSER SPGRLSIGVG LLQGHKGHHH QQGNNEYTDE RFKDKSEDHK  360
FETRNHRKGM DSATELDLNT HVESYSTTTR TKQFDLNGFS WN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-20	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-20	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-20	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-20	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa19g006240.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY074563	0.0	AY074563.1 Arabidopsis thaliana AT3g04030/T11I18_14 mRNA, complete cds.
GenBank	AY143915	0.0	AY143915.1 Arabidopsis thaliana At3g04030/T11I18_14 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010485773.1	0.0	PREDICTED: myb-related protein 2-like
Swissprot	Q9SQQ9	0.0	PHL9_ARATH; Myb-related protein 2
TrEMBL	R0G5G2	0.0	R0G5G2_9BRAS; Uncharacterized protein
STRING	XP_010485773.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3336	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.1	0.0	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]