PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g006580.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 439aa    MW: 48604.2 Da    PI: 5.8778
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g006580.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.4e-32239293155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWtpeLHe+Fveav+qLGG e+AtPk++l+l++ +gLt++hvkSHLQkYR 
  Csa19g006580.1 239 KQRMRWTPELHEAFVEAVNQLGGGERATPKAVLKLINSPGLTIYHVKSHLQKYRK 293
                     79****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.023236296IPR017930Myb domain
SuperFamilySSF466893.94E-17237293IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-30238294IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-23239293IPR006447Myb domain, plants
PfamPF002492.3E-11241292IPR001005SANT/Myb domain
PfamPF143791.4E-22327374IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MSSSFATLDE RHHRNFPNIL WVSSGQELMN NNPVPCQAFP LVSGCSSGGN SFSSSSGFCN  60
GVYVSSSSQA RPPVSTVPRG SMTIAHVSEE GQRQECSMAT QSLQVINQPQ EQRNMTWSSD  120
QLQGFFDFHV PVPQAESSRT TVSSKEVHSK SEWPDWADQL MSDDGLEPWS ELLGDPVALN  180
LDSEITTPSS DIARQEIVFN NQRQVDPLMD PFNAKNSPAS SVTMDPLNAK TPASSMTSKQ  240
RMRWTPELHE AFVEAVNQLG GGERATPKAV LKLINSPGLT IYHVKSHLQK YRKARYKPEL  300
SENKEEPPVK NLKTVEDIKS LDLKTSIEIT EALRLQMKVQ KQLHEQLEIQ RSLQLRIEEQ  360
GRYLQMMIEK QQKMQGSSSV PEAEGSAPSQ SPSQVFLPNK ATNSEPSTIT QTLQSGANTI  420
SQSESASGSN RKRVREED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-27239297260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-27239297260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-27239297260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-27239297260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-27239297260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-27239297260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-27239297260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-27239297260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g006580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1186300.0AK118630.1 Arabidopsis thaliana At3g04450 mRNA for putative transfactor, complete cds, clone: RAFL19-89-P11.
GenBankBT0053520.0BT005352.1 Arabidopsis thaliana At3g04445 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010485818.10.0PREDICTED: myb family transcription factor PHL13-like isoform X1
SwissprotF4J3P70.0PHLD_ARATH; Myb family transcription factor PHL13
TrEMBLD7L2520.0D7L252_ARALL; Transcription factor
STRINGXP_010485818.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85627117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04450.10.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]