PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g011510.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 393aa    MW: 44494.7 Da    PI: 6.7019
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g011510.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14.3e-13110151345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       W ++E+ ll++a++ +G g+Wk +a ++g  +t  +c+++++
   Csa19g011510.1 110 DWNADEEILLLEAIATYGLGNWKEVADHVG-SKTKIECRDHFN 151
                      6*****************************.**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250247.8E-12337392IPR016827Transcriptional adaptor 2
SMARTSM002914.5E-74792IPR000433Zinc finger, ZZ-type
PfamPF005692.8E-75183IPR000433Zinc finger, ZZ-type
CDDcd023351.34E-245199No hitNo description
SuperFamilySSF578508.59E-1551114No hitNo description
PROSITE patternPS0135705380IPR000433Zinc finger, ZZ-type
PROSITE profilePS5013510.7455394IPR000433Zinc finger, ZZ-type
Gene3DG3DSA:1.10.10.601.2E-11103153IPR009057Homeodomain-like
SuperFamilySSF466893.66E-13103157IPR009057Homeodomain-like
PROSITE profilePS5129319.701106158IPR017884SANT domain
SMARTSM007171.4E-10107156IPR001005SANT/Myb domain
PfamPF002495.3E-12110152IPR001005SANT/Myb domain
CDDcd001673.50E-11111151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0016573Biological Processhistone acetylation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MGRSKLASRP ADADLNPGKS KRKKISTGSD YAGASVSTGG EAGNERKAGL YCCNYCDKDL  60
SGLVRFKCAV CMDFDLCVEC FSVGVELNRH KNSHPYRVMD NLSFSLVTSD WNADEEILLL  120
EAIATYGLGN WKEVADHVGS KTKIECRDHF NSAYMQSPLF PLPDLSHTIG KSKEELLAMS  180
KEHDVKAEIP ALARLSPKEE LPMLAEIKHK ASGKEDAIDQ PLTALAGVKK KVNVPQAKDM  240
TKLEAAKQQS DRSVGEKKLR LPGEKVPLVT ELYGYNLKRE EFEIEHDNDA EQLLADMEFK  300
DSDTDAEREQ KLQVLHIYSK RLDERKRRKE FVLERNLLHP DQYEMGLSAE EKKIYKSCKV  360
FARFHSKEEH KELIKEVIEE HQILRRIQDL QV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E3e-33531667120Transcriptional adapter 2
6cw3_G3e-33531667120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324329RKRRKE
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known (By similarity). ADA2 stimulates the acetyltransferase activity of GCN5 on free histones or nucleosomes, probably by opening up the promoter region. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g011510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3387690.0AF338769.1 Arabidopsis thaliana transcriptional adaptor ADA2a (ADA2a) mRNA, complete cds.
GenBankAF3602460.0AF360246.1 Arabidopsis thaliana unknown protein (At3g07740) mRNA, complete cds.
GenBankAY0400450.0AY040045.1 Arabidopsis thaliana unknown protein (At3g07740) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486344.10.0PREDICTED: transcriptional adapter ADA2a
SwissprotQ9SFD50.0TAD2A_ARATH; Transcriptional adapter ADA2a
TrEMBLR0HKN80.0R0HKN8_9BRAS; Transcriptional adapter
STRINGXP_010486344.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM282225
Publications ? help Back to Top
  1. Hark AT, et al.
    Two Arabidopsis orthologs of the transcriptional coactivator ADA2 have distinct biological functions.
    Biochim. Biophys. Acta, 2009. 1789(2): p. 117-24
    [PMID:18929690]