PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g013190.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family S1Fa-like
Protein Properties Length: 74aa    MW: 8038.76 Da    PI: 10.7779
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g013190.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA137.33.5e-43673370
            S1FA  3 vakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                     +k+e+kGlnPGlivllv+ggll+ flvgn ily+yaqknlPPrkkkP+skkk+k+ek+kqGv+vPGe
  Csa19g013190.1  6 SGKIESKGLNPGLIVLLVIGGLLVSFLVGNIILYTYAQKNLPPRKKKPLSKKKMKKEKMKQGVQVPGE 73
                    6799***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046891.1E-37973IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MAEDFSGKIE SKGLNPGLIV LLVIGGLLVS FLVGNIILYT YAQKNLPPRK KKPLSKKKMK  60
KEKMKQGVQV PGE*
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g013190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3806294e-85AF380629.1 Arabidopsis thaliana AT3g09731 mRNA, complete cds.
GenBankAK1189704e-85AK118970.1 Arabidopsis thaliana At3g09735 mRNA for unknown protein, complete cds, clone: RAFL21-30-H15.
GenBankAY0541294e-85AY054129.1 Arabidopsis thaliana AT3g09731 mRNA, complete cds.
GenBankAY0871864e-85AY087186.1 Arabidopsis thaliana clone 32612 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019096122.15e-44PREDICTED: DNA-binding protein S1FA3
SwissprotQ423376e-17S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLA0A1J3J4X31e-26A0A1J3J4X3_NOCCA; DNA-binding protein S1FA2
STRINGA0A087H8A92e-26(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28232769