PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g013520.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 521aa    MW: 56960.5 Da    PI: 7.4701
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g013520.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.84.6e-21139224186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  + +L++a++++ ++l+rg+l++ +We+v++ +  r  ++++s +qCk+k++nl+kryk ++++++++  +sss++p+f+++e
  Csa19g013520.1 139 EWSDAAIACLLDAYSDKFTQLNRGNLRGRDWEDVASSVseRCDKLSKSVEQCKNKIDNLKKRYKLERHRMSGG--TSSSNWPWFKKME 224
                     5*************************************777789****************************8..57789*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.8E-22137226No hitNo description
Gene3DG3DSA:3.40.1160.101.4E-66272512IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536333.01E-53279512IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042545.52E-121281513No hitNo description
PfamPF006961.8E-24282492IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MASCDDDFSL LGDDQSNPNQ HQHHHHHQVL HHTPYATRRF TPKPSNQIHL SHHHQRNGDE  60
DDENDVVVEA SSAFHGVNPF VADENSNPIG GARLEKRQSQ EELSDGGTTN GGETTPHGSF  120
KRPRTSSSSA GEYRKDREEW SDAAIACLLD AYSDKFTQLN RGNLRGRDWE DVASSVSERC  180
DKLSKSVEQC KNKIDNLKKR YKLERHRMSG GTSSSNWPWF KKMEDIVGNS LATKGASDED  240
RSGSSMGNPV KPARRYPLVT YNPPVQINNV KPKANSHPRW RRVVLKISGA ALACTGPNNI  300
DPKVINLIAR EVAMACRLGV EVAIVVGSRN FFCGSTWITA TGLDRTTAYH ISMMASVMNS  360
ALLQSSLEKI GVQARLQTAI SVQGVGEPYN RQRATRHLDK GRVVIFGGIG ATLGNPLLSS  420
DASAALRAID INAEAVVKGT NVDGVYDCHS QDSNVTFEHI TFQDLASRGL TSMDTMALNF  480
CEENSLPVVV FNFLEAGNIT KALCGEQVGT LIDRNGRGVS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A1e-572745123239Uridylate kinase
3ek5_B1e-572745123239Uridylate kinase
3ek5_C1e-572745123239Uridylate kinase
3ek5_D1e-572745123239Uridylate kinase
3ek5_E1e-572745123239Uridylate kinase
3ek5_F1e-572745123239Uridylate kinase
3ek6_A1e-572745123239Uridylate kinase
3ek6_B1e-572745123239Uridylate kinase
3ek6_C1e-572745123239Uridylate kinase
3ek6_D1e-572745123239Uridylate kinase
3ek6_E1e-572745123239Uridylate kinase
3ek6_F1e-572745123239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g013520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3754310.0AF375431.1 Arabidopsis thaliana AT3g10030/T22K18_15 mRNA, complete cds.
GenBankAY1206870.0AY120687.1 Arabidopsis thaliana AT3g10030/T22K18_15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480055.10.0PREDICTED: uncharacterized protein LOC104758773
TrEMBLA0A384L5830.0A0A384L583_ARATH; Uncharacterized protein
TrEMBLQ94JR10.0Q94JR1_ARATH; AT3g10030/T22K18_15
STRINGXP_010480055.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93052631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein