PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g015200.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 223aa    MW: 25399.4 Da    PI: 10.3224
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g015200.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-152771147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r ++T++E+  +++ +++lG++ W+ Ia+ ++ +Rt+ ++k++w++ 
   Csa19g015200.1 27 RSKFTPQEENEIIKFHALLGNR-WAVIAKQIP-NRTDHDIKNHWNSC 71
                     789*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.17121IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.5E-10733IPR009057Homeodomain-like
SuperFamilySSF466893.26E-21780IPR009057Homeodomain-like
PROSITE profilePS5129424.4722276IPR017930Myb domain
SMARTSM007172.8E-142674IPR001005SANT/Myb domain
PfamPF002498.6E-152771IPR001005SANT/Myb domain
CDDcd001679.11E-102969No hitNo description
Gene3DG3DSA:1.10.10.605.4E-193476IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MHKKGLQRCR RSCRLRWMNY LRPGIKRSKF TPQEENEIIK FHALLGNRWA VIAKQIPNRT  60
DHDIKNHWNS CLKKRLAKQR IDPMTHEPTF LTVDEATSYP ITLPSPTPST SSSSSSFSST  120
GSARLLNKLA AGIASRKYRL DRIKMVILSE QPREASDKEK MLITMDEKDL IACFMDIDEK  180
LSRASFLVSA CWTDCSVMAA LLVCDRSNSN AQTLRNSKQF AY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-1927636108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g015200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019101180.11e-109PREDICTED: transcription factor MYB80-like
TrEMBLR0I0D01e-101R0I0D0_9BRAS; Uncharacterized protein
STRINGCagra.1655s0054.1.p1e-103(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74430.17e-79myb domain protein 95