PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa19g017040.2

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 187aa MW: 21862.4 Da PI: 5.6544

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa19g017040.2	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.1	1.7e-07	16	46	1	31
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 rg+W+ eE e+l +++ G +W++ ++ Csa19g017040.2 16 RGPWSDEESERLRAFIEKNGHQNWRSLPKLA 46 89***********************999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.2E-10	7	45	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.957	11	58	IPR017877	Myb-like domain
SuperFamily	SSF46689	3.07E-6	14	48	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MGKRRAPCCD KSQVRRGPWS DEESERLRAF IEKNGHQNWR SLPKLAVDSV CNLNRIDEMR 60 KELSSKMDKL SETRSQTRQL HQRRGRYHYP PSPGSWKQDV IINNEKPNQE EEFEEIFVEQ 120 MACGFEVNAP QSLECLFGDS HILPPISKPD LLEIHGKSDH EFWSRLVEPG FDDYNEWLNF 180 LDNQTC*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in metal ions homeostasis, including iron ions (Fe) acquisition, via the regulation of NAS4 and NAS2 genes expression. Necessary for plant survival in alkaline soil where iron availability is greatly restricted. Triggers tolerance to nickel (Ni) and zinc (Zn) ions. {ECO:0000269\|PubMed:24278034}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa19g017040.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates strongly in the root stele and in the outer layers of the lateral roots when exposed to iron (Fe)-deficient conditions (PubMed:24278034). Slightly induced by ethylene and by darkness conditions (PubMed:9839469). Accumulates upon potassium (K) depletion (PubMed:15489280). Induced by zinc (Zn) and cadmium (Cd) ions (PubMed:18088336). {ECO:0000269\|PubMed:15489280, ECO:0000269\|PubMed:18088336, ECO:0000269\|PubMed:24278034, ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB024033	5e-87	AB024033.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MBK21.
GenBank	AF062862	5e-87	AF062862.1 Arabidopsis thaliana putative transcription factor (MYB10) mRNA, partial cds.
GenBank	AY519586	5e-87	AY519586.1 Arabidopsis thaliana MYB transcription factor (At3g12820) mRNA, complete cds.
GenBank	CP002686	5e-87	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010465061.1	5e-82	PREDICTED: myb-related protein Zm1-like
Swissprot	Q9LTV4	1e-46	MYB10_ARATH; Transcription factor MYB10
TrEMBL	D7L0K7	3e-68	D7L0K7_ARALL; AtMYB10
STRING	XP_010465061.1	2e-81	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12820.1	5e-42	myb domain protein 10

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]