PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g017290.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 447aa    MW: 49272 Da    PI: 6.7866
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g017290.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.52.2e-31237291155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr+rWtpeLHe+Fv+ v +L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl
  Csa19g017290.1 237 KPRMRWTPELHESFVKSVIKLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 291
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-29235292IPR009057Homeodomain-like
SuperFamilySSF466896.45E-16236291IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-23237292IPR006447Myb domain, plants
PfamPF002491.0E-7239290IPR001005SANT/Myb domain
PfamPF143793.5E-22327374IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MNRHSLVSTA PNECNKGVGQ ACLSSLPPVH NFLNVQPQTR KSPFIRSQSP DSPGQLWSKN  60
TSQSTFSRSS TFCTNLYLSS SSTSETQKHL GNSLPFLPDP SSYSHSASGV ESARSPSVFS  120
EDLGNQYGGG DNSGSLVKDF LNLSGDACSD GGFHDFGCSN DSYCLSDQME LQFLSDELEL  180
AITDRAETPR LDEIYETPLA SSNPVTRLSP SQSCAAGAVS IDVVSSHPSP GSAANHKPRM  240
RWTPELHESF VKSVIKLEGP EKATPKAVLK LMNVEGLTIY HVKSHLQKYR LAKYMPEKKE  300
EKKNENSEER KLALSISEAD EKKKGAIQLT EALRMQMEVQ KQLHEQLEVQ RVLQLRIEEH  360
AKYLEKMLEE QRKTGRLICS SPSQTVLSPS DDSIPDSQNM SKTEATSPQP SPSKKKKASE  420
TEDNKCESPQ KRPRLENKAD LEGPNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g017290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0508890.0AY050889.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.
GenBankAY0966740.0AY096674.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010487043.10.0PREDICTED: myb family transcription factor PHL6
SwissprotQ949U20.0PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLD7L0M90.0D7L0M9_ARALL; Uncharacterized protein
STRINGXP_010487043.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67862744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.20.0G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]