PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa19g019320.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C2H2

Protein Properties

Length: 521aa MW: 57692.8 Da PI: 8.2851

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa19g019320.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	107	129	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Csa19g019320.1 107 FVCEICNKGFQRDQNLQLHRRGH 129 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.7E-5	106	129	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.22E-6	106	129	No hit	No description
SMART	SM00355	0.017	107	129	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	107	129	IPR007087	Zinc finger, C2H2
Pfam	PF12171	8.3E-5	107	129	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	109	129	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	149	179	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.22E-6	179	204	No hit	No description
SMART	SM00355	180	184	204	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MMNKDMLLHQ HHHQPQQEQV QHQQDENMSN LTSASGGDQA SVSSGNITEA SGSNYFPHHQ 60 QQQQQQQFCI PDLSQPQKKR RNQPGNPDPE SEVIALSPKT LMATNRFVCE ICNKGFQRDQ 120 NLQLHRRGHN LPWKLKQRSN KEIIRKKVYV CPEATCVHHD PSRALGDLTG IKKHFCRKHG 180 EKKWKCDKCS KKYAVQSDCK AHSKTCGTKE YRCDCGTLFS RRDSFITHRA FCEALAEETA 240 REVVLPTQNQ NSQPNPLLIC QSSSHPHSHH HQTQPNINLS SSSSSSHNII NSLHFDTNNA 300 STSNVNSSSN HLHTFPMKKE QQSNDHIINY HHNIPPWLAP QPHSHQPHDL TSSNPNSCNG 360 AGRGLFSLAS PAMSATALLQ KAAQMGSTKT TTTDLERSTH NSTLTTTMAS MMTSPSGFIN 420 SNNNNQGLFQ DYSASGFDHH GGEEAFDDTF GGFLRTNEAT TTASAARSEK SKSGGGEGLT 480 RDFLGIRPLM SHNEILSFAG LGNCINSSAS DQLHPKPWQG *

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MMNKDMLLHQ HHHQPQQEQV QHQQDENMSN LTSASGGDQA SVSSGNITEA SGSNYFPHHQ  60
QQQQQQQFCI PDLSQPQKKR RNQPGNPDPE SEVIALSPKT LMATNRFVCE ICNKGFQRDQ  120
NLQLHRRGHN LPWKLKQRSN KEIIRKKVYV CPEATCVHHD PSRALGDLTG IKKHFCRKHG  180
EKKWKCDKCS KKYAVQSDCK AHSKTCGTKE YRCDCGTLFS RRDSFITHRA FCEALAEETA  240
REVVLPTQNQ NSQPNPLLIC QSSSHPHSHH HQTQPNINLS SSSSSSHNII NSLHFDTNNA  300
STSNVNSSSN HLHTFPMKKE QQSNDHIINY HHNIPPWLAP QPHSHQPHDL TSSNPNSCNG  360
AGRGLFSLAS PAMSATALLQ KAAQMGSTKT TTTDLERSTH NSTLTTTMAS MMTSPSGFIN  420
SNNNNQGLFQ DYSASGFDHH GGEEAFDDTF GGFLRTNEAT TTASAARSEK SKSGGGEGLT  480
RDFLGIRPLM SHNEILSFAG LGNCINSSAS DQLHPKPWQG *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-32	180	249	3	72	Zinc finger protein JACKDAW
5b3h_F	2e-32	180	249	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	146	KLKQRSNKEIIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa19g019320.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF361797	0.0	AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
GenBank	AY091693	0.0	AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010487157.1	0.0	PREDICTED: protein indeterminate-domain 11-like isoform X1
Refseq	XP_010487158.1	0.0	PREDICTED: protein indeterminate-domain 11-like isoform X1
Refseq	XP_019096182.1	0.0	PREDICTED: protein indeterminate-domain 11-like isoform X1
Swissprot	Q9LRW7	0.0	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	A0A1J3FCK1	0.0	A0A1J3FCK1_NOCCA; Protein indeterminate-domain 11 (Fragment)
STRING	XP_010487157.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	0.0	indeterminate(ID)-domain 11

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]