PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa19g019350.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GRAS

Protein Properties

Length: 278aa MW: 31549.6 Da PI: 9.0715

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa19g019350.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	107.5	1.8e-33	70	277	140	374
GRAS 140 pslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl 234 s+R+ + + ++++ ++ ++L fA++l+++++++v+ + +++ +++p+E+l+++ +++lh+l sl++er+e L+++++l Csa19g019350.1 70 SSVRMASARATSMRDARKSYSYDSQLLGFARSLKINLQISVI--D-----KFQLTDTSPHETLIICAQFRLHHLK---YSLPEERSEALRALRRL 154 46677766666666999999******************96..3.....33444889************8...88899999***** PP GRAS 235 sPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327 +Pk v+++e++ + +s++F++ f+++ley ++++ds+++++ +e+ eer+ +E++ e + kW er++eaGF + Csa19g019350.1 155 RPKGVILCENNGEDnTSGDFAAAFSRKLEYLWKFLDSTSSGFKEENsEERKLIEEM-----------DE---------GKDKWYERMREAGFAAE 229 *******9995778****************999877765788888888...........44.........556********** PP GRAS 328 plsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++e+a + ak+llrk++ +++ r+e+ + + l+Wk++++ ++S W+ Csa19g019350.1 230 AFGEDAIDGAKSLLRKYDkNWEIRMEDGDTFAGLTWKGEAVSFCSLWK 277 **************666666666666666************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	10.002	1	256	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.1E-31	70	277	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MPRSSTNPHS RSALVLPLGR PPRSTPKMGV HDVRSHSTSK LEVDTKLEVG EHKNDKHERV 60 SVRVSSVRAS SVRMASARAT SMRDARKSYS YDSQLLGFAR SLKINLQISV IDKFQLTDTS 120 PHETLIICAQ FRLHHLKYSL PEERSEALRA LRRLRPKGVI LCENNGEDNT SGDFAAAFSR 180 KLEYLWKFLD STSSGFKEEN SEERKLIEEM DEGKDKWYER MREAGFAAEA FGEDAIDGAK 240 SLLRKYDKNW EIRMEDGDTF AGLTWKGEAV SFCSLWK*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa19g019350.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC237328	1e-104	AC237328.1 Arabidopsis lyrata clone JGIFAFI-41L7, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010487189.1	1e-129	PREDICTED: scarecrow-like protein 29
Swissprot	Q9LRW3	1e-109	SCL29_ARATH; Scarecrow-like protein 29
TrEMBL	D7L290	1e-113	D7L290_ARALL; Scarecrow transcription factor family protein
STRING	XP_010487189.1	1e-129	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13840.1	1e-87	GRAS family protein