PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g020610.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-YA
Protein Properties Length: 292aa    MW: 32882.8 Da    PI: 10.3475
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g020610.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.92.9e-32176232158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQyq+Il+RRq+Rakle+++kl +k rkpylheSRh+hAl+R+RgsgGrF
  Csa19g020610.1 176 NEPVYVNAKQYQAILRRRQHRAKLEAQNKL-IKVRKPYLHESRHRHALKRARGSGGRF 232
                     59****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.0E-36174235IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.637175235IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.0E-27177232IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.0E-23178200IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860180200IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.0E-23209232IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MQEFRSLPYP ATSWDNSVFT NSKLQGSSSV TDNSTLSLTM EMMSTHFPRM KQTGFQLQDH  60
DSSSTQSTGG ESYSEVASLS EPNTRYGHNI ATHLSGYKEN PENRIRSHSK SILSKVSQHS  120
VVLPIEAASW PLHSTETPHF NGFLSFPYVS QHTVQHPQIG GLVPSRMLLP HNIPENEPVY  180
VNAKQYQAIL RRRQHRAKLE AQNKLIKVRK PYLHESRHRH ALKRARGSGG RFLNTKKLQE  240
SKPPPFSGSP HVCKNSPGKF WQQDITGNNN DMFQQNGFSG YPSNHHVSVL M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-20176236262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216225RHRHALKRAR
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g020610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936130.0AB493613.1 Arabidopsis thaliana At3g14020 mRNA for hypothetical protein, partial cds, clone: RAAt3g14020.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010487188.10.0PREDICTED: nuclear transcription factor Y subunit A-6-like
RefseqXP_019096259.10.0PREDICTED: nuclear transcription factor Y subunit A-6-like
SwissprotQ9LVJ71e-158NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBLD7L2B41e-168D7L2B4_ARALL; Predicted protein
STRINGXP_010487188.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147331620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.11e-160nuclear factor Y, subunit A6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]