 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Csa19g020620.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
GRAS |
| Protein Properties |
Length: 512aa MW: 57652.7 Da PI: 4.9452 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa19g020620.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 270.7 | 4.7e-83 | 145 | 511 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfsh 95
++lL cA ++s++ +++q++L+ lselas++gd+++Rla + ++AL+++l++ s ++++++ p+ + ++ +++ + l f+evsP++ + +
Csa19g020620.1 145 EQLLNPCALTITSRNSSRVQHYLCVLSELASSSGDANRRLADFGLRALQHHLSSsSLPSISSSSPVVAFASAEVKMFQKTLLKFYEVSPWFALPN 239
689**************************************************989999999999999995555555555555************ PP
GRAS 96 ltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl 181
+aN+aIl+ +++e + +H++D+++s+G+QWp+Ll+aL++R+ ++pp++RiT+v++ +++ + ++ ++L fA++l+++++++v+
Csa19g020620.1 240 NMANSAILQILAQEpidkQDLHVLDIGVSHGMQWPTLLEALSCRSeGPPPHVRITVVSDLTADipfsVGPSAYSYDSQLLGFARSLKIHLQISVI 334
*************99998999************************55667*********99999998889999********************96 PP
GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleakl 275
+++ +++ p+E+l+++ +++lh+l s+++er+e L+++++l+Pk v+++e++ + +s++F++ f+++ley ++++ds+++++
Csa19g020620.1 335 -------DKFQLIDTAPHETLIICAQFRLHHLK---YSIPEERSEALRALRRLRPKGVILCENNGEDnTSGDFAAAFSRKLEYLWKFLDSTSSGF 419
.......566889*******************8...88999999********************9995778********************9997 PP
GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvs 369
+e+++ Er+l++ e+++v++++g++ e + kW er++eaGF + +++e+a + ak+llrk++ +++ r+e+ + + l+Wk++++ +
Csa19g020620.1 420 ----KEENSEERKLIEGEATKVLMNAGEM----DEGKDKWYERMREAGFAAEAFGEDAIDGAKSLLRKYDkNWEIRMEDGDTFAGLTWKGEAVSF 506
....8888899999**************9....999**********************************666666666666666********** PP
GRAS 370 vSaWr 374
+S W+
Csa19g020620.1 507 CSLWK 511
****8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 512 aa
Download sequence Send
to blast |
MSLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSFLLHE FDGSQTWEWD QTQDPENGFI 60
QSYSQDLSAY VGYEATNLEV LTEAPFIYLD PLPELQQPND QSRKRSSEKV IEAQHVKRSE 120
RRKKKSNKSS EKSCKDGNKE ERWAEQLLNP CALTITSRNS SRVQHYLCVL SELASSSGDA 180
NRRLADFGLR ALQHHLSSSS LPSISSSSPV VAFASAEVKM FQKTLLKFYE VSPWFALPNN 240
MANSAILQIL AQEPIDKQDL HVLDIGVSHG MQWPTLLEAL SCRSEGPPPH VRITVVSDLT 300
ADIPFSVGPS AYSYDSQLLG FARSLKIHLQ ISVIDKFQLI DTAPHETLII CAQFRLHHLK 360
YSIPEERSEA LRALRRLRPK GVILCENNGE DNTSGDFAAA FSRKLEYLWK FLDSTSSGFK 420
EENSEERKLI EGEATKVLMN AGEMDEGKDK WYERMREAGF AAEAFGEDAI DGAKSLLRKY 480
DKNWEIRMED GDTFAGLTWK GEAVSFCSLW K*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 102 | 123 | RKRSSEKVIEAQHVKRSERRKK |
| 2 | 102 | 124 | RKRSSEKVIEAQHVKRSERRKKK |
| 3 | 116 | 123 | KRSERRKK |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC237328 | 0.0 | AC237328.1 Arabidopsis lyrata clone JGIFAFI-41L7, complete sequence. |
