PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g023160.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 239aa    MW: 26391.9 Da    PI: 4.4982
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g023160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-1755105155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr ++ +g+Wv+eIr p++   ++r++lg+f ta++Aa+a++ a++ ++g
  Csa19g023160.1  55 PVYRGVRMRS-WGKWVSEIRQPRK---KTRIWLGTFATADMAARAHDVAALTIKG 105
                     68*****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-1255105IPR001471AP2/ERF domain
SMARTSM003801.3E-3556119IPR001471AP2/ERF domain
PROSITE profilePS5103222.58956113IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2156114IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-3156114IPR001471AP2/ERF domain
CDDcd000182.68E-3157115No hitNo description
PRINTSPR003672.1E-105768IPR001471AP2/ERF domain
PRINTSPR003672.1E-107995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSSLNSSSSP TSSSSDQSDA TTTTTTSSTH LSEKNTRKRR RDSSSSASSS SPKHPVYRGV  60
RMRSWGKWVS EIRQPRKKTR IWLGTFATAD MAARAHDVAA LTIKGSSAVI NFPELTSLFP  120
RPVSSSPQDI QAAAAEAAAM VVEGKTSETE IETETETSSE APPRPSESSE EERLEEIVEL  180
PNIEEGRYDE SVTSRDDLAY SEPLDCWVYP PVMDFYEEIS EFNFVELWSF PPHTELIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1745118377Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13640RKRRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00362DAPTransfer from AT3G16280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g023160.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV LIGHT. {ECO:0000269|PubMed:16307362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010487482.11e-171PREDICTED: ethylene-responsive transcription factor ERF036-like
SwissprotQ9LU181e-100ERF36_ARATH; Ethylene-responsive transcription factor ERF036
TrEMBLV4LCY01e-105V4LCY0_EUTSA; Uncharacterized protein
STRINGXP_010487482.11e-171(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150411618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16280.13e-69ERF family protein