PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g025350.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 820aa    MW: 92422.5 Da    PI: 5.0109
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g025350.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14.1e-08507551246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+WT+ Ed+ l + +++ G  +W  Ia  +g++Rt+ qc  r+q 
   Csa19g025350.1 507 GPWTEAEDKNLPRIIEEKGLTDWLDIAVSLGTNRTPFQCLARYQR 551
                      89*****************************************96 PP
2Myb_DNA-binding452.4e-14559603146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++ WT eEd++l  av+++G ++W ++a+ +  gRt+ qc +rw k
   Csa19g025350.1 559 KKEWTSEEDDQLRAAVELFGDKDWQSVANVLK-GRTGPQCSNRWKK 603
                      679****************************9.***********98 PP
3Myb_DNA-binding53.36.6e-17610655147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +grW+ eEd++ + av+++G+ +W++I++ ++ gRt+ qc++rw + 
   Csa19g025350.1 610 KGRWSLEEDKRVKVAVTLFGSQNWHKISQFVP-GRTATQCRERWVNC 655
                      79******************************.***********986 PP
4Myb_DNA-binding45.32.1e-14662706147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+WT+eEde+l  a++++G   W+++a+ +   Rt++qc  rw ++
   Csa19g025350.1 662 RGKWTEEEDEKLRVAIAKHGYS-WSKVASDLS-CRTDNQCLRRWKTL 706
                      89******************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.995407500IPR017877Myb-like domain
SMARTSM0071720411502IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-6414430IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-6476512IPR009057Homeodomain-like
SuperFamilySSF466893.48E-13484550IPR009057Homeodomain-like
PROSITE profilePS500909.106501553IPR017877Myb-like domain
SMARTSM007175.6E-8505555IPR001005SANT/Myb domain
PfamPF002491.0E-7507551IPR001005SANT/Myb domain
CDDcd001671.31E-5508553No hitNo description
Gene3DG3DSA:1.10.10.604.2E-13513564IPR009057Homeodomain-like
SuperFamilySSF466896.07E-20538608IPR009057Homeodomain-like
PROSITE profilePS5129420.852554609IPR017930Myb domain
SMARTSM007175.4E-14558607IPR001005SANT/Myb domain
PfamPF002491.2E-12559603IPR001005SANT/Myb domain
CDDcd001673.40E-11561605No hitNo description
Gene3DG3DSA:1.10.10.602.4E-16565607IPR009057Homeodomain-like
SMARTSM007175.2E-14609658IPR001005SANT/Myb domain
PfamPF002495.1E-15610655IPR001005SANT/Myb domain
PROSITE profilePS5129413.459610656IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-20611660IPR009057Homeodomain-like
CDDcd001675.94E-11612654No hitNo description
SuperFamilySSF466893.95E-25636711IPR009057Homeodomain-like
PROSITE profilePS5129425.368657711IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-19661706IPR009057Homeodomain-like
SMARTSM007172.9E-12661709IPR001005SANT/Myb domain
PfamPF002493.0E-13662706IPR001005SANT/Myb domain
CDDcd001672.45E-10664706No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
MNRNSLYEAY GDDDDDEEDD IGEDIEEIRR AFIVSDANSD QFAAKTNSIE ADGGGGGEMP  60
SDSENEDDLE MLRSVRSQLA SSKDAELSSG PPVGLSLPSD SESEDDFEMI RSITSQLALS  120
MDVPIPPIGL SDDDDEDEDG AFETLRVIRR RFSAYANFGE LNCETLLLKW VKIVLQMVRL  180
IWFSFGFIIG SLGGKYAYAL VVISSADPEG NFMNDSAGKK KQVHDSDNEL SREILSRSNT  240
CESFPDHGKS IVTVPDSEDV QDGRSVDVHE NTSAEHHDHM ETSQLSLMPE SSTFPEAAQA  300
FIDAIRKNRA YQKFLRRKLE VIEATIEQNE KHKKNVKIVK DFQASCKRIT KLALVQRKDP  360
RVELISTRKS VPCDSSEGND KKTSPLMLGP PENPCVADYR MALEKYPVSV ERRKWSTEEN  420
KNLAKGIKQE VQKILLYEAI EQSSDLEGST YDIDAINESI RNLEITPEMI RQFLPKINWE  480
SLDIKDRSAA ECEARWMSSE DPLINHGPWT EAEDKNLPRI IEEKGLTDWL DIAVSLGTNR  540
TPFQCLARYQ RSLNASILKK EWTSEEDDQL RAAVELFGDK DWQSVANVLK GRTGPQCSNR  600
WKKSLRPTRK GRWSLEEDKR VKVAVTLFGS QNWHKISQFV PGRTATQCRE RWVNCLEPKL  660
NRGKWTEEED EKLRVAIAKH GYSWSKVASD LSCRTDNQCL RRWKTLYPHQ VALLQEARRL  720
RKEAIVGNFV DRESERPALV TGAILALPDI SPEPEPDSVA RKKKGKAKQK KSDAERQPKR  780
RRKGLEKCSG AVCRQENETV CENEPNNGGG GEVVGSGTV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-304867116159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-304867116159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1761782KKKGKAKQKKSDAERQPKRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g025350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0338270.0AY033827.1 Arabidopsis thaliana putative transcription factor (MYB4R1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010465888.10.0PREDICTED: myb-like protein L isoform X1
TrEMBLR0G3G90.0R0G3G9_9BRAS; Uncharacterized protein
STRINGXP_010465887.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65042744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1