PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g026420.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 209aa    MW: 23804 Da    PI: 6.404
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g026420.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.47e-1530119197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk+ +p +++k++++ +p +f++  g+k   +  +tle++ g + ++kl  ++ ++++++ +GW+eF++a+ +keg f++F++ + s+f  +v 
  Csa19g026420.1  30 FFKIILP-STMKNDMMKIPPTFVKLQGSK--LPDVVTLETPVGFKRSIKL--KRIGQEIWFHEGWSEFAEAHSIKEGHFLLFQYYEISSF--RVI 117
                     6777755.5666778********666655..7889***************..*******************************9766888..666 PP

                     EE CS
              B3  96 vf 97 
                     +f
  Csa19g026420.1 118 IF 119
                     65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.69E-2224124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-2025124IPR015300DNA-binding pseudobarrel domain
CDDcd100172.22E-1428120No hitNo description
PROSITE profilePS5086312.13929122IPR003340B3 DNA binding domain
PfamPF023625.0E-1330119IPR003340B3 DNA binding domain
SMARTSM010191.2E-1630122IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVTTRKTKAR ITSSSHGRPP QDPESPVKTF FKIILPSTMK NDMMKIPPTF VKLQGSKLPD  60
VVTLETPVGF KRSIKLKRIG QEIWFHEGWS EFAEAHSIKE GHFLLFQYYE ISSFRVIIFN  120
VSACEIEYPR DAVHISDSDD DIIDITDERF VGTQITRGNN QSVNGGDTEH NPKKRPSDIE  180
FDKILQDVDV ISSIHVPKEE EDIRVFRG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g026420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2296810.0AK229681.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-04-N20.
GenBankBT0061390.0BT006139.1 Arabidopsis thaliana clone RAFL21-04-N20 (R51235) unknown protein (At3g18960) mRNA, complete cds.
GenBankBT0085410.0BT008541.1 Arabidopsis thaliana clone U51235 unknown protein (At3g18960) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010487826.11e-152PREDICTED: B3 domain-containing protein At3g18960-like
SwissprotQ84R271e-108Y3896_ARATH; B3 domain-containing protein At3g18960
TrEMBLA0A178VGT71e-106A0A178VGT7_ARATH; Uncharacterized protein
STRINGXP_010487826.11e-151(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.11e-110B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]