PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g026890.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 406aa    MW: 45489 Da    PI: 7.376
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g026890.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.94e-09112136126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+ C  f++ GtC+ G+ C+FaHg
  Csa19g026890.1 112 YKTRMCAKFRA-GTCRNGELCNFAHG 136
                     9**********.*************8 PP
2zf-CCCH19.61.6e-062092231125
                     GTS.--TTTTT-SS-S CS
         zf-CCCH  11 rtG.tCkyGdrCkFaH 25 
                       G +C+yGdrC+F+H
  Csa19g026890.1 209 F-GeECPYGDRCNFIH 223
                     5.449*********** PP
3zf-CCCH43.84.1e-14289315127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+lC+ f  tG+C++Gd+C+FaHg+
  Csa19g026890.1 289 WKTRLCMKFEITGQCPFGDKCHFAHGQ 315
                     8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.3E-15109144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-8110142IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-4111137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793111138IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5112136IPR000571Zinc finger, CCCH-type
SMARTSM003560.0033198225IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-6198225IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.577198226IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-8200226IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-10284319IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-15286318IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7288315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.507288316IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-11289315IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDSSYSDSRP MFVQSPYGGW NQNLMMDSAV NPMISEQGDL HSLSEPQSQS QSQSSQQLQQ  60
PSLKRPRLVD DNVFNLQASS FPPPTPTSSN PWMVPSLNPP PLVNKGTANI FYKTRMCAKF  120
RAGTCRNGEL CNFAHGIEDL RQPPSNWQEI VGPPAQDRDR ERERERERER ERERERERER  180
PVLAPVGNNS WDDDQKIILR MKLCRKFCFG EECPYGDRCN FIHEELSKFR EDSGKLRETS  240
VISVGTTAAD QPSVDNGTAS NHMEVVNRQG SIPVPAPMNN GGVVKTVYWK TRLCMKFEIT  300
GQCPFGDKCH FAHGQAELHN SVGRVEGEAV NAVASVSKQT VVPANESFAM KPTAQVIADS  360
SGLNEEGRRK KCLLKWSDSK KINRIYGDWI DDLPVGQKST KPVES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169179RERERERERER
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g026890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0372260.0AY037226.1 Arabidopsis thaliana AT3g19360/MLD14_8 mRNA, complete cds.
GenBankAY0817450.0AY081745.1 Arabidopsis thaliana AT3g19360/MLD14_8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010487875.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
SwissprotQ9LT810.0C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLR0HYU20.0R0HYU2_9BRAS; Uncharacterized protein
STRINGXP_010487875.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.10.0C3H family protein