PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g029740.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 125aa    MW: 14449.3 Da    PI: 9.7073
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g029740.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26084.71.4e-26121121100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +Ca C +++++C+++C + pyfpae++ +++n+h+lFG  n++k+++ +p+++ + +++ss+++e++a+ +d  +G ++ i+kl++++   k  l
  Csa19g029740.1  12 PCALCTTKNKTCSHNCEFTPYFPAEKKLEYKNAHELFGIPNIMKMMRFAPTTKeKCMLASSILMEGKAWKDDQAKGGLKKIRKLKWEILLRKLYL 106
                     7************************************************888868999*******************************999999 PP

          DUF260  95 allkee 100
                     ++lke+
  Csa19g029740.1 107 NELKEK 112
                     999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.7411113IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-2212107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MDVQIINVIR EPCALCTTKN KTCSHNCEFT PYFPAEKKLE YKNAHELFGI PNIMKMMRFA  60
PTTKEKCMLA SSILMEGKAW KDDQAKGGLK KIRKLKWEIL LRKLYLNELK EKIKVVEEET  120
KLAL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g029740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010490008.12e-80PREDICTED: LOB domain-containing protein 9-like
SwissprotO821985e-49LBD9_ARATH; LOB domain-containing protein 9
TrEMBLR0GAA15e-47R0GAA1_9BRAS; Uncharacterized protein
STRINGXP_010488181.13e-86(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122821432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19820.15e-51LOB domain-containing protein 9