PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g030900.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 125aa    MW: 14455.2 Da    PI: 8.7339
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g030900.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26088.77.6e-28121121100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +Ca C +++++C+++C +apyfpae++ +++n+h+lFG+ n++k+++ +p++e + +++ss+++e++a+ +d  +G ++ i+kl++++   k  l
  Csa19g030900.1  12 PCALCTTKNKTCSQNCEFAPYFPAEKKLEYKNAHELFGTPNIMKMMRFAPTTEeKCMLASSILMEGKAWKDDHAKGGFEKIRKLKWEILLRKLYL 106
                     7************************************************87775999********************************999999 PP

          DUF260  95 allkee 100
                     ++lke+
  Csa19g030900.1 107 NELKEK 112
                     999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.25911113IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-2312107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MDVQIINVIR EPCALCTTKN KTCSQNCEFA PYFPAEKKLE YKNAHELFGT PNIMKMMRFA  60
PTTEEKCMLA SSILMEGKAW KDDHAKGGFE KIRKLKWEIL LRKLYLNELK EKIKVVEEEI  120
KLAL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g030900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010490008.11e-86PREDICTED: LOB domain-containing protein 9-like
SwissprotO821985e-51LBD9_ARATH; LOB domain-containing protein 9
TrEMBLR0GAA14e-49R0GAA1_9BRAS; Uncharacterized protein
STRINGXP_010490007.12e-86(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122821432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19820.17e-53LOB domain-containing protein 9