PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g031020.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 413aa    MW: 47291.9 Da    PI: 4.834
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g031020.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.25.9e-081033226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     t+lC  f +tG C++ ++C+FaHg
  Csa19g031020.1 10 ETKLCILFKKTGNCSR-PNCSFAHG 33
                    699*************.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.291835IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-61033IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-81140IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MFMELCLTFE TKLCILFKKT GNCSRPNCSF AHGTVELRRP GESSSFTESI SSTAGRHHNM  60
DSDLRDRLGR QFSPERRPSL DRSGRRLQRF GGHENASPFE NRRDKDYRGN NRFYERRDYA  120
GALKVGNRIE DRAEDGRNKF QGYNNVLEEQ LKDVEMDVKM LTDDKLRLEA SVERKAHEVD  180
ILTSRIEELE TQLDREKEEC RRSEARLQKL GNQLSTYFAG SEGINRDVNV DIVSDEENNG  240
RNLRTACDPQ NELQNISSMP RKKRYVDQYT TKETVEDGFI GRGEEEMEKE KKRPSRWNMG  300
SSKSYSEEES GAWNDEDTIN KSSSKEDNWK RRRFSIGTSS TDKVISSTSM AAQAFDDVAE  360
FDEENPEAAK SSPLISLPPP PPFRDTHVQG DEDDENVDVM EQGKANDLDD SI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g031020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0598990.0AY059899.1 Arabidopsis thaliana Unknown protein (At3g21810; MSD21.12) mRNA, complete cds.
GenBankAY1287910.0AY128791.1 Arabidopsis thaliana unknown protein (At3g21810) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488206.10.0PREDICTED: zinc finger CCCH domain-containing protein 40-like isoform X1
SwissprotQ93XW70.0C3H40_ARATH; Zinc finger CCCH domain-containing protein 40
TrEMBLR0HR330.0R0HR33_9BRAS; Uncharacterized protein
STRINGXP_010488206.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100692127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.10.0C3H family protein