PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa19g031380.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

FAR1

Protein Properties

Length: 371aa MW: 41485.5 Da PI: 8.9859

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa19g031380.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.7	6.2e-26	20	122	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerr....traetrtgCkaklkvkkekdgkwevt 79 +fY+eY++ +GF++ +++s++sk+++e+++++f Cs++g+++e +k+ +r+ +t+Cka+++vk++ dgkw+++ Csa19g031380.1 20 SFYQEYSRAIGFNTAIQNSRRSKTTREFIDAKFACSRYGTKREYDKSfnrprarqskqdP----DnmagRRTCAKTDCKASMHVKRRPDGKWVIH 110 5*****************************************9999999876654433....1455599999***************** PP FAR1 80 kleleHnHelap 91 +++ eHnHel p Csa19g031380.1 111 SFVREHNHELLP 122 *******975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.5E-24	20	122	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MMNLEPLNGM EFESHGEAYS FYQEYSRAIG FNTAIQNSRR SKTTREFIDA KFACSRYGTK 60 REYDKSFNRP RARQSKQDPD NMAGRRTCAK TDCKASMHVK RRPDGKWVIH SFVREHNHEL 120 LPAQAVSEQT RKIYAAMAKQ CEEEAKADSE TWNKQPALKS PSPFEKSVSE VYTPAVFKKF 180 QIEVLGAIAS LKLTEEASFS QESYNIAFGA IEGALGNCAG INTSGRSLPD VVTSPTQGLI 240 SVEEDNQSRN AGKTSKKKNP TKKRKVNSEP EVMPVAPPES LQQMDKLSSR AVSIESYYGT 300 QQSVQGMVQL NLMAPTRDNF YGSQQTMQGL RQLNSLAPSY DSYYGAQQGI HGPGVDFFRP 360 PNYPYDIPDM *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MMNLEPLNGM EFESHGEAYS FYQEYSRAIG FNTAIQNSRR SKTTREFIDA KFACSRYGTK  60
REYDKSFNRP RARQSKQDPD NMAGRRTCAK TDCKASMHVK RRPDGKWVIH SFVREHNHEL  120
LPAQAVSEQT RKIYAAMAKQ CEEEAKADSE TWNKQPALKS PSPFEKSVSE VYTPAVFKKF  180
QIEVLGAIAS LKLTEEASFS QESYNIAFGA IEGALGNCAG INTSGRSLPD VVTSPTQGLI  240
SVEEDNQSRN AGKTSKKKNP TKKRKVNSEP EVMPVAPPES LQQMDKLSSR AVSIESYYGT  300
QQSVQGMVQL NLMAPTRDNF YGSQQTMQGL RQLNSLAPSY DSYYGAQQGI HGPGVDFFRP  360
PNYPYDIPDM *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:17012604, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:18715961, ECO:0000269\|PubMed:22634759}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa19g031380.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP001306	1e-165	AP001306.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MKA23.
GenBank	CP002686	1e-165	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010488230.1	1e-113	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
Refseq	XP_019097030.1	1e-113	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
Swissprot	Q9LIE5	2e-95	FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBL	A0A2P5Q0G2	1e-145	A0A2P5Q0G2_GOSBA; Uncharacterized protein
STRING	XP_010488230.1	1e-113	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	9e-95	far-red elongated hypocotyls 3

Publications ? help Back to Top
Chang N,Gao Y,Zhao L,Liu X,Gao H Arabidopsis FHY3/CPD45 regulates far-red light signaling and chloroplast division in parallel. Sci Rep, 2015. 5: p. 9612 [PMID:25872642] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Li D, et al. FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9375-80 [PMID:27469166] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]