PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g040120.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 473aa    MW: 52397 Da    PI: 6.902
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g040120.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.83.1e-30114172160
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     ++DgynWrKYGqK vkg+ef rsYYrCt+++C++kk++ers   ++vv+++Y geH+h+k
  Csa19g040120.1 114 MEDGYNWRKYGQKLVKGNEFVRSYYRCTHPNCKAKKQLERSP-GGQVVDTVYFGEHDHPK 172
                     58****************************************.***************85 PP
2WRKY105.72.3e-33286344159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dgy+WrKYGqK+vkgs++prsYYrC+s+gCpvkk+vers++d+k++++tYeg+H+h+
  Csa19g040120.1 286 VNDGYRWRKYGQKSVKGSPYPRSYYRCSSSGCPVKKHVERSSHDTKLLITTYEGKHDHD 344
                     58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.355109173IPR003657WRKY domain
SuperFamilySSF1182901.09E-24110173IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.5E-26111173IPR003657WRKY domain
SMARTSM007741.7E-34114172IPR003657WRKY domain
PfamPF031069.8E-24115171IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-34272346IPR003657WRKY domain
SuperFamilySSF1182901.31E-28280346IPR003657WRKY domain
PROSITE profilePS5081134.991281346IPR003657WRKY domain
SMARTSM007741.3E-38286345IPR003657WRKY domain
PfamPF031063.0E-26287343IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MAEVGKVPVS DMELDDSSET KVADDVVATD EMEAKPVTVT RAETVVEGCQ TESSKSAECK  60
ELLQPVPHTT ASQSEVDVAS PTSEKPPKIS ESSTALSLQS GSEGNSPFIR EKVMEDGYNW  120
RKYGQKLVKG NEFVRSYYRC THPNCKAKKQ LERSPGGQVV DTVYFGEHDH PKPLTGPVPI  180
NQDKRSDVFT SVSKEKSSGS IVQTPRQTEP PKIHRGLHVS VVPPADDVKT DSSQSSRIKG  240
DNSHKDYNSP SSKRRKKGGN IEPSPVERST NDSRIVVHTQ TLFDIVNDGY RWRKYGQKSV  300
KGSPYPRSYY RCSSSGCPVK KHVERSSHDT KLLITTYEGK HDHDMPPGRV VTHNNVLDSE  360
VDDKELNVKE GDANKTPQSS GLQSIIKDQH DEDHPIKKTK TNGFEKSLDQ GPVLDEKLKE  420
DIKDISDVNK DHAANHTKLE TKSDDKTTAC HEKAVRTLET EEQKPKTEPA QS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-48113348176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g040120.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4423900.0AF442390.1 Arabidopsis thaliana WRKY transcription factor 1 splice variant 2 (WRKY1) mRNA, complete cds; alternatively spliced.
GenBankBT0291670.0BT029167.1 Arabidopsis thaliana At2g04880 mRNA, complete cds.
GenBankX929760.0X92976.1 A.thaliana mRNA for ZAP1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488735.10.0PREDICTED: WRKY transcription factor 1
SwissprotQ9SI370.0WRKY1_ARATH; WRKY transcription factor 1
TrEMBLC0SV430.0C0SV43_ARATH; Uncharacterized protein At2g04880 (Fragment)
STRINGXP_010488735.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79492639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.20.0zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]