PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g043220.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 219aa    MW: 25469.2 Da    PI: 9.655
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g043220.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_119.91.6e-06138184552
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                     k+ rr   NReAA rs + K +++  Le  vk +e+  + ++++ e+l
  Csa19g043220.1 138 KKVRRILANREAAARSKKMKSQYLLDLEHQVKFFEKDITLMQEK-ETL 184
                     8889999***************************9998644444.443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.1E-7134198IPR004827Basic-leucine zipper domain
PfamPF077161.2E-7134187IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.53E-8138193No hitNo description
Gene3DG3DSA:1.20.5.1708.4E-7138192No hitNo description
CDDcd147039.17E-12139190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEEEQHRPEM PMESRICRRK LESSMEKTNY FAKPDPQRLT KCRFDNKQPS SPTSSVKRRA  60
GKNIEPLSRH YRSVPVDSCF SNFLELPLYP GVVSSTSSAD GDYQNTLDLK LGKDEYTTDE  120
LKKISKCTKL TEMKSDPKKV RRILANREAA ARSKKMKSQY LLDLEHQVKF FEKDITLMQE  180
KETLLENDKN MLIDEKKEFR IRLESLSNKQ NIMTGHII*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g043220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010425022.14e-89PREDICTED: transcription factor VIP1-like
TrEMBLR0HRR36e-47R0HRR3_9BRAS; Uncharacterized protein
STRINGXP_010490203.11e-114(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1932736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13150.11e-47bZIP family protein