PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa19g046490.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 261aa MW: 30106.3 Da PI: 4.4285

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa19g046490.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	95.3	9.2e-30	1	128	5	128
NAM 5 frFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevls 94 f+F P+deel +yLk+ ++k +++ i++v+iyk++P +L ++++ +++ew+f ++r+k ++gk++nr + gyW+at k++++ Csa19g046490.1 1 FKFTPSDEELFINYLKPFSPDRKyyyPPFNIPIHHVNIYKSNPYQLSVEFEKgNDEEWFFVTERNKIGKNGKKQNRgDDSGGYWNATVGAKQIYA 95 89**************99999886555445**********96555426779999999999999***88889********** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +vg + L + gr p+g+ktdW+mhey + Csa19g046490.1 96 -GQDDVGYVTALEYCVGRPPNGVKTDWLMHEYWF 128 .999**************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-35	1	148	IPR003441	NAC domain
Pfam	PF02365	5.7E-13	1	126	IPR003441	NAC domain
PROSITE profile	PS51005	36.449	1	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
FKFTPSDEEL FINYLKPFSP DRKYYYPPFN IPIHHVNIYK SNPYQLSVEF EKGNDEEWFF 60 VTERNKIGKN GKKQNRGDDS GGYWNATVGA KQIYAGQDDV GYVTALEYCV GRPPNGVKTD 120 WLMHEYWFES SSDDNDKVDY ALCKIYLTPS AVKRMKAEKK EKLKKGKGVS KEEVKQLDLQ 180 HQQDQSQLQQ PHDSLLPAQQ HEPQPQPPVI PDDDNFDDFD ELPEDFKDFL AQLMKPDSLD 240 GDEQPDDSDF LQGFITDGME *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-19	1	154	21	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-19	1	154	21	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-19	1	154	21	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-19	1	154	21	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-19	1	154	24	174	NAC domain-containing protein 19
3swm_B	2e-19	1	154	24	174	NAC domain-containing protein 19
3swm_C	2e-19	1	154	24	174	NAC domain-containing protein 19
3swm_D	2e-19	1	154	24	174	NAC domain-containing protein 19
3swp_A	2e-19	1	154	24	174	NAC domain-containing protein 19
3swp_B	2e-19	1	154	24	174	NAC domain-containing protein 19
3swp_C	2e-19	1	154	24	174	NAC domain-containing protein 19
3swp_D	2e-19	1	154	24	174	NAC domain-containing protein 19
4dul_A	2e-19	1	154	21	171	NAC domain-containing protein 19
4dul_B	2e-19	1	154	21	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa19g046490.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019096491.1	0.0	PREDICTED: NAC transcription factor 29-like
TrEMBL	D7LVH1	7e-74	D7LVH1_ARALL; Uncharacterized protein
STRING	XP_010490255.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2793	15	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56530.1	2e-55	NAC domain containing protein 64