PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa19g048360.2

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 431aa MW: 48255.7 Da PI: 4.9632

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa19g048360.2	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.6	2.9e-33	263	317	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe Fv+av+qLGG ekAtPk +l++m+v+gLt++hvkSHLQkYR+ Csa19g048360.2 263 KRRMRWTPELHEVFVDAVNQLGGGEKATPKGVLKHMNVEGLTIYHVKSHLQKYRT 317 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.281	260	320	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-31	261	318	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.3E-18	262	317	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.1E-25	263	318	IPR006447	Myb domain, plants
Pfam	PF00249	4.6E-11	265	316	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-20	349	393	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
ENKEQQIERE QVRYKDPGLI APTGSKALSG VFLSSSRGFG VFSYILLRTI MERRSLRPPV 60 PSDISLIPSF QNPSVKEADM SFYPQHNQLM ATPYHLLSAN DGSVGHIYST SDLSANDGVL 120 DHMYSSDFHN SESSVWIPSP LPDPFDFPSP SPIQRSQMDD GVIVASDEIH EQCDWPVWDD 180 HLITDGDSLS STVLEELLLD TNFNSASEVQ QPSTPSQIQQ PQVGLQQPSP CLDLRPLVRT 240 VSSNNNNNNN NSGSNRNHNA AAKRRMRWTP ELHEVFVDAV NQLGGGEKAT PKGVLKHMNV 300 EGLTIYHVKS HLQKYRTAKY VPEPSEGSPE TKLGPLEQIT SVDTKRGIDV TEALRLQMEV 360 QKQLHEQLEI QREMQIRIEE QGKALMMMFE KQNIGFGNLE QEDKTSAEKP ENGSEESSDS 420 PRAKRRRNEE *

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

ENKEQQIERE QVRYKDPGLI APTGSKALSG VFLSSSRGFG VFSYILLRTI MERRSLRPPV  60
PSDISLIPSF QNPSVKEADM SFYPQHNQLM ATPYHLLSAN DGSVGHIYST SDLSANDGVL  120
DHMYSSDFHN SESSVWIPSP LPDPFDFPSP SPIQRSQMDD GVIVASDEIH EQCDWPVWDD  180
HLITDGDSLS STVLEELLLD TNFNSASEVQ QPSTPSQIQQ PQVGLQQPSP CLDLRPLVRT  240
VSSNNNNNNN NSGSNRNHNA AAKRRMRWTP ELHEVFVDAV NQLGGGEKAT PKGVLKHMNV  300
EGLTIYHVKS HLQKYRTAKY VPEPSEGSPE TKLGPLEQIT SVDTKRGIDV TEALRLQMEV  360
QKQLHEQLEI QREMQIRIEE QGKALMMMFE KQNIGFGNLE QEDKTSAEKP ENGSEESSDS  420
PRAKRRRNEE *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-28	262	320	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-28	262	320	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-28	262	320	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-28	262	320	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-28	262	320	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-28	262	320	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-28	262	320	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-28	262	320	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in male gametophyte development. {ECO:0000269\|PubMed:22101548}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa19g048360.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010489045.1	0.0	PREDICTED: myb family transcription factor PHL4-like
Swissprot	Q8GXC2	1e-142	PHL4_ARATH; Myb family transcription factor PHL4
TrEMBL	D7L3M9	1e-145	D7L3M9_ARALL; Uncharacterized protein
STRING	XP_010489045.1	0.0	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20400.1	1e-104	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]