PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa19g057740.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 201aa MW: 22369.1 Da PI: 7.5019

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa19g057740.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.2	3.1e-12	62	118	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 ++ +r+ +NRe+ArrsR RK++ ++ L+ + +L++ N++ + l ++++ k ++ Csa19g057740.1 62 RKRKRMLSNRESARRSRMRKQKHVDDLTAQINQLSNDNRQILNSLTVTSQLYMKIQA 118 57899*********************************8877777666666666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.6E-10	58	105	No hit	No description
SMART	SM00338	5.7E-16	58	122	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.197	60	123	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.04E-11	62	113	No hit	No description
Pfam	PF00170	1.7E-9	62	112	IPR004827	Basic-leucine zipper domain
CDD	cd14702	3.41E-21	63	114	No hit	No description
PROSITE pattern	PS00036	0	65	80	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MTPVLCEILL SGLTVKSALR RRTHLVQSFS VVFLYCTYRS SSSSDGGNNN PSSDSVVTVD 60 ERKRKRMLSN RESARRSRMR KQKHVDDLTA QINQLSNDNR QILNSLTVTS QLYMKIQAEN 120 SVLTAQMSEL STRLHSLNEI VDLVQSNGAG FGVDQIDGCG FDDRTVGIDG YYEDMMSGVN 180 HWGGSVYSNQ PIMANDINMY *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	61	82	RKRKRMLSNRESARRSRMRKQK
2	74	81	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to specific DNA sequences in target gene promoters. BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000250\|UniProtKB:O65683, ECO:0000269\|PubMed:29348240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa19g057740.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007212	0.0	AC007212.7 Arabidopsis thaliana chromosome 2 clone F8D23 map PhyB, complete sequence.
GenBank	AK230244	0.0	AK230244.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-13-A15.
GenBank	AY037216	0.0	AY037216.1 Arabidopsis thaliana At2g18160/F8D23.6 mRNA, complete cds.
GenBank	AY133545	0.0	AY133545.1 Arabidopsis thaliana At2g18160/F8D23.6 mRNA, complete cds.
GenBank	BT000700	0.0	BT000700.1 Arabidopsis thaliana clone RAFL08-13-K01 (R11176) putative bZIP transcription factor (At2g18160) mRNA, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010489514.1	1e-118	PREDICTED: bZIP transcription factor 2
Swissprot	Q9SI15	1e-105	BZIP2_ARATH; bZIP transcription factor 2
TrEMBL	A0A3P6ES75	1e-122	A0A3P6ES75_BRAOL; Uncharacterized protein
STRING	Bo7g011520.1	1e-121	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM501	28	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18160.1	1e-101	basic leucine-zipper 2

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]