PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g058050.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 203aa    MW: 23115.3 Da    PI: 9.9451
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g058050.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57340.57.6e-13591371092
          DUF573  10 eDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                       ei++LqG++d+ a tgk+p+ ++++ +ef+k+  +++ s +++veK+ +LKk+  +++++    keps s   +qk+ +l 
  Csa19g058050.1  59 YEEISVLQGILDCYALTGKNPFVNMKETFEFMKEYTNLE-SFDEFVEKMNSLKKQLMDQRRN---AKEPSTSDCYYQKVSKLL 137
                     579*******************************99998.5678************999999...889999998888888875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MGKVNSNRSE KKEVCGGSGA AQLTGKKRKN EGTLLANKDV NAKRSKKVVK KVCSQRLEYE  60
EISVLQGILD CYALTGKNPF VNMKETFEFM KEYTNLESFD EFVEKMNSLK KQLMDQRRNA  120
KEPSTSDCYY QKVSKLLTSA VEKPKRSKRA VKPKEEKQTV MSREGEKWFE NASLVRQVVS  180
RGVDEDSLKS KWDARGSYSE EE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g058050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010490439.11e-146PREDICTED: probable transcription factor At4g00232
TrEMBLR0I4G65e-56R0I4G6_9BRAS; Uncharacterized protein
STRINGXP_010490439.11e-145(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16691712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00232.15e-26DNA-binding storekeeper protein-related transcriptional regulator