PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g058170.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 507aa    MW: 56102.6 Da    PI: 4.9132
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g058170.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2969.4e-911285052374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     ve L+++++ v+s++l+laq +L+rl+++ +sp+g+p++R+a+yf+eAL + +++      +  + + +s+++ ++++ a k fs vsPi+ fsh
  Csa19g058170.1 128 VEDLIRVVNYVDSDELQLAQVILSRLNQRlRSPTGRPLERAAFYFKEALGSLITG-----TNRNQNRLSSWSDIVQKIRAIKEFSGVSPIPLFSH 217
                     688*************************99*************************.....6777888999999********************** PP

            GRAS  96 ltaNqaIleavege........erv......HiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                     +taNqaIl+++ ++        +        H++Df+i+ G+Q+++L++++a+++ +g   lR+T+v+   ++s+ e++ ++e+La+fA+ l+++
  Csa19g058170.1 218 FTANQAILDSLTRQqqhqssssS-SssppfaHVVDFEIGFGAQYASLMREIAEKSvSGIRFLRVTAVVT--EDSAVETRLVKENLAQFAADLEIQ 309
                     **********9988655555540.0455556************************99999*********..459********************* PP

            GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.....adhnsesFlerflealeyys 265
                     f++++++++++e l+l+++r+  gE ++V ++  + r l       + ++ ++  ++++sP+vvv+v++e     ++ +++sF ++f++ le+y+
  Csa19g058170.1 310 FQIEFVLMRTFEVLSLKSIRFVDGERTVVLISPVILRRL-------NGISGFVYDLRRVSPEVVVFVDSEgcwtgISGGAGSFQREFVSGLEFYT 397
                     ********************************9999998.......33567*******************76654455788************** PP

            GRAS 266 alfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                     ++f+sl+a ++       ++ +E ++l+++i ++v ++ ++   r  ++++W+e++ +aG++ vpls+++  qa++l++k +++g++v +++g+l
  Csa19g058170.1 398 TVFESLDAAVAGGGgdLVKKIIETFVLRPKIASAVETAANK---RGGEMMTWQEAFCAAGMRMVPLSQFVDFQAECLVEKAQVRGFHVAKRQGEL 489
                     ******999987665588999***************99998...888899********************************************* PP

            GRAS 359 vlgWkdrpLvsvSaWr 374
                     +l+W++rpL+++SaWr
  Csa19g058170.1 490 FLCWHERPLIATSAWR 505
                     ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.984101485IPR005202Transcription factor GRAS
PfamPF035143.3E-88128505IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MRVPASSDTN SNSNLVCFNE PTSVLDLRRS PSPSPSTAEE KPLLVSDQFP LDDDDHGMRC  60
SMDWDSIMKE LDLDDDNLKP NFPSSPHFST AADPPLLPIF PDQLHPPEFP AGHGYGFNNE  120
GGGGLDFVED LIRVVNYVDS DELQLAQVIL SRLNQRLRSP TGRPLERAAF YFKEALGSLI  180
TGTNRNQNRL SSWSDIVQKI RAIKEFSGVS PIPLFSHFTA NQAILDSLTR QQQHQSSSSS  240
SSSPPFAHVV DFEIGFGAQY ASLMREIAEK SVSGIRFLRV TAVVTEDSAV ETRLVKENLA  300
QFAADLEIQF QIEFVLMRTF EVLSLKSIRF VDGERTVVLI SPVILRRLNG ISGFVYDLRR  360
VSPEVVVFVD SEGCWTGISG GAGSFQREFV SGLEFYTTVF ESLDAAVAGG GGDLVKKIIE  420
TFVLRPKIAS AVETAANKRG GEMMTWQEAF CAAGMRMVPL SQFVDFQAEC LVEKAQVRGF  480
HVAKRQGELF LCWHERPLIA TSAWRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-2313850429377Protein SCARECROW
5b3h_D4e-2313850429377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g058170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010489558.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLR0HL020.0R0HL02_9BRAS; Uncharacterized protein
STRINGXP_010489558.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]