PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20018s010.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Trihelix

Protein Properties

Length: 92aa MW: 10931.3 Da PI: 10.5469

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20018s010.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.3	4.8e-24	16	90	1	77
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 rW+++ev+aLi r+++e++ + k+ W+e+s++m+erg+ rs+k+Ckekwen+nk+y+++ eg +k+ +e+s+ Csa20018s010.1 16 RWPQEEVQALISTRSDVEDKAVMN-NKGSIWDEISARMKERGYDRSAKKCKEKWENMNKYYRRVMEGGRKQ-PEHSK 90 8***************997765.89**************************************9995.77775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0069	13	74	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.82E-5	14	74	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.7E-6	15	72	IPR009057	Homeodomain-like
Pfam	PF13837	9.3E-20	15	88	No hit	No description
PROSITE profile	PS50090	7.596	16	72	IPR017877	Myb-like domain
CDD	cd12203	6.26E-19	17	78	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
EIKFRYSRGG SSSGRRWPQE EVQALISTRS DVEDKAVMNN KGSIWDEISA RMKERGYDRS 60 AKKCKEKWEN MNKYYRRVME GGRKQPEHSK TR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20018s010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB025628	4e-92	AB025628.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNJ7.
GenBank	AK118665	4e-92	AK118665.1 Arabidopsis thaliana At5g47660 mRNA for unknown protein, complete cds, clone: RAFL19-93-K15.
GenBank	CP002688	4e-92	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010441426.1	2e-59	PREDICTED: trihelix transcription factor GTL1
Refseq	XP_010495821.2	2e-60	PREDICTED: trihelix transcription factor GTL1-like
Swissprot	Q39117	2e-21	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	D7MP23	9e-45	D7MP23_ARALL; Predicted protein
STRING	XP_010441426.1	6e-59	(Camelina sativa)
STRING	XP_010495821.1	1e-59	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9411	27	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	9e-45	Trihelix family protein