PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20097s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 87aa    MW: 9655.16 Da    PI: 6.8256
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20097s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS49.58e-16285189276
            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklp 276
                     l+++++r+ +gE ++V ++ +++r l       s ++++++ ++++sPkvvv+v++e  ++  +s+sF ++f++ale+y+++++sl+a +p
  Csa20097s010.1   2 LSFKAIRFVEGERTIVLISPAIFRRL-------SGISDFVNNLRRVSPKVVVFVDSEgwTEIaGSGSFRREFVSALEFYTMVLESLDAAAP 85 
                     78899********************9.......33557*******************76677899*********************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098511.148187IPR005202Transcription factor GRAS
PfamPF035142.8E-13285IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MLSFKAIRFV EGERTIVLIS PAIFRRLSGI SDFVNNLRRV SPKVVVFVDS EGWTEIAGSG  60
SFRREFVSAL EFYTMVLESL DAAAPPG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20097s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1184973e-89AK118497.1 Arabidopsis thaliana At4g36710 mRNA for ap2 SCARECROW-like protein, complete cds, clone: RAFL19-73-D11.
GenBankAK2296373e-89AK229637.1 Arabidopsis thaliana mRNA for hypothetical protein, partial cds, clone: RAFL19-66-B20.
GenBankAL1615893e-89AL161589.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85.
GenBankBT0118073e-89BT011807.1 Arabidopsis thaliana At4g36710 mRNA sequence.
GenBankCP0026873e-89CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ997083e-89Z99708.1 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010437312.13e-52PREDICTED: scarecrow-like protein 15 isoform X2
RefseqXP_010437313.13e-52PREDICTED: scarecrow-like protein 15 isoform X3
RefseqXP_010446750.13e-52PREDICTED: scarecrow-like protein 15 isoform X1
SwissprotO232102e-52SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1J3GXM92e-52A0A1J3GXM9_NOCCA; Scarecrow-like protein 15 (Fragment)
STRINGXP_010437312.11e-51(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.19e-55GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]