PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20270s010.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GRAS

Protein Properties

Length: 88aa MW: 10329.9 Da PI: 7.9224

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20270s010.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	96.2	4.9e-30	1	88	286	373
GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 Er++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF+p p+s++++++++ l+++ + + y+++ee g+l ++W++++L+++SaW Csa20270s010.1 1 ERQCLARDIVNIVACEGEERIERYEAAGKWRARMMMAGFSPKPMSSRVTNNIQNLIKQQYCNNYKLKEEMGELHFCWEEKSLIVASAW 88 89********************************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	1.7E-27	1	88	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	15.919	1	69	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
ERQCLARDIV NIVACEGEER IERYEAAGKW RARMMMAGFS PKPMSSRVTN NIQNLIKQQY 60 CNNYKLKEEM GELHFCWEEK SLIVASAW

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20270s010.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC015447	1e-112	AC015447.8 Arabidopsis thaliana chromosome I BAC F24J8 genomic sequence, complete sequence.
GenBank	AF036300	1e-112	AF036300.1 Arabidopsis thaliana scarecrow-like 1 (SCL1) mRNA, partial cds.
GenBank	AF210731	1e-112	AF210731.1 Arabidopsis thaliana scarecrow-like 1 (SCL1) mRNA, complete cds.
GenBank	AY045833	1e-112	AY045833.1 Arabidopsis thaliana putative scarecrow 1 protein (At1g21450) mRNA, complete cds.
GenBank	AY084492	1e-112	AY084492.1 Arabidopsis thaliana clone 109490 mRNA, complete sequence.
GenBank	AY096626	1e-112	AY096626.1 Arabidopsis thaliana unknown protein (At1g21450) mRNA, complete cds.
GenBank	CP002684	1e-112	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010496505.1	5e-58	PREDICTED: scarecrow-like protein 1
Refseq	XP_010496506.1	5e-58	PREDICTED: scarecrow-like protein 1
Swissprot	Q9SDQ3	2e-56	SCL1_ARATH; Scarecrow-like protein 1
TrEMBL	D7KK12	2e-54	D7KK12_ARALL; Uncharacterized protein
STRING	XP_010496505.1	2e-57	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	9e-59	SCARECROW-like 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]