PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g002110.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TALE

Protein Properties

Length: 581aa MW: 62354.9 Da PI: 7.951

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g002110.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28	3.7e-09	377	409	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +++ LAk++gL+ +qV++WF N R + Csa20g002110.1 377 HPYPTDTDKLMLAKQTGLSRNQVSNWFINARVR 409 89*****************************87 PP
2	BELL	112.5	2.2e-36	232	300	4	72
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 ++ kkk+kL+s+l+eV+krYkqy+eqlq+v++sFe+vaglg+a+pY++lAlka+S+hF+cLk+ai++q+ Csa20g002110.1 232 DNGKKKSKLISMLDEVYKRYKQYYEQLQAVMGSFECVAGLGHAAPYATLALKALSKHFKCLKNAITDQL 300 5789**************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	4.4E-70	171	298	IPR006563	POX domain
Pfam	PF07526	8.5E-35	176	297	IPR006563	POX domain
CDD	cd00086	2.05E-11	353	414	No hit	No description
SMART	SM00389	4.0E-9	353	417	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.41E-17	355	420	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.2E-27	357	417	IPR009057	Homeodomain-like
Pfam	PF05920	1.8E-18	370	409	IPR008422	Homeobox KN domain
PROSITE profile	PS50071	11.645	372	413	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence Send to blast
MADAYEPYHV LQQSRRDKLR IPSLDSHFHF HPPPPSSSSG GGGGGGGVFP LADSDFLAAG 60 GFHPNNNHNN NNISNPSYSN FMGFLGGPSS SSSTAVAVAG DHSFNAGLSS GDVLVFKPEP 120 LSLSLSSHPR LAYDLLVPGV VNSGFCRSAA EANAAAVTVA SRSSGPLGPF TGYASILKGS 180 RFLKPAQMLL DEFCNVGRGI YTDKVIDDDD SSLLFDPTVE NLCGVSDGGG GDNGKKKSKL 240 ISMLDEVYKR YKQYYEQLQA VMGSFECVAG LGHAAPYATL ALKALSKHFK CLKNAITDQL 300 QFSHNNKIQQ QCGHPMNSEN KTDSLRFGGS DSSRGFCSAG QRHGFPDHHA PVWRPHRGLP 360 ERAVTVLRAW LFDHFLHPYP TDTDKLMLAK QTGLSRNQVS NWFINARVRV WKPMVEEIHM 420 LETRQSQRSS SSSWRDERSS NTVFPDNSNN NPSSSAAHQR ANNSSPARRA RNDDVHGTTN 480 NNNNNSYVNT GSGGGFSYGI GSSNVPVMSN STNGGVSLTL GLHHQIGLPE PFPMTTAQRF 540 GLDGGSGDGG GGGGYEGQNR QFGRDFIGGS NHQFLHDFVG *

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence Send to blast

MADAYEPYHV LQQSRRDKLR IPSLDSHFHF HPPPPSSSSG GGGGGGGVFP LADSDFLAAG  60
GFHPNNNHNN NNISNPSYSN FMGFLGGPSS SSSTAVAVAG DHSFNAGLSS GDVLVFKPEP  120
LSLSLSSHPR LAYDLLVPGV VNSGFCRSAA EANAAAVTVA SRSSGPLGPF TGYASILKGS  180
RFLKPAQMLL DEFCNVGRGI YTDKVIDDDD SSLLFDPTVE NLCGVSDGGG GDNGKKKSKL  240
ISMLDEVYKR YKQYYEQLQA VMGSFECVAG LGHAAPYATL ALKALSKHFK CLKNAITDQL  300
QFSHNNKIQQ QCGHPMNSEN KTDSLRFGGS DSSRGFCSAG QRHGFPDHHA PVWRPHRGLP  360
ERAVTVLRAW LFDHFLHPYP TDTDKLMLAK QTGLSRNQVS NWFINARVRV WKPMVEEIHM  420
LETRQSQRSS SSSWRDERSS NTVFPDNSNN NPSSSAAHQR ANNSSPARRA RNDDVHGTTN  480
NNNNNSYVNT GSGGGFSYGI GSSNVPVMSN STNGGVSLTL GLHHQIGLPE PFPMTTAQRF  540
GLDGGSGDGG GGGGYEGQNR QFGRDFIGGS NHQFLHDFVG *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrm_A	8e-17	359	417	5	63	Homeobox protein Meis2
4xrm_B	8e-17	359	417	5	63	Homeobox protein Meis2
5bng_A	7e-17	359	417	1	59	Homeobox protein Meis2
5bng_B	7e-17	359	417	1	59	Homeobox protein Meis2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269\|PubMed:12874117, ECO:0000269\|PubMed:12897247, ECO:0000269\|PubMed:13678595, ECO:0000269\|PubMed:15019989, ECO:0000269\|PubMed:15120075, ECO:0000269\|PubMed:15155890, ECO:0000269\|PubMed:16741748}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g002110.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY328314	0.0	AY328314.1 Arabidopsis thaliana bellringer homeodomain protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010490618.1	0.0	PREDICTED: BEL1-like homeodomain protein 9
Swissprot	Q9LZM8	0.0	BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBL	R0FE52	0.0	R0FE52_9BRAS; Uncharacterized protein
STRING	XP_010490618.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5688	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02030.1	0.0	TALE family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Pabón-Mora N,Wong GK,Ambrose BA Evolution of fruit development genes in flowering plants. Front Plant Sci, 2014. 5: p. 300 [PMID:25018763] Khan M, et al. Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis. Plant Physiol., 2015. 169(3): p. 2166-86 [PMID:26417006] Andrés F, et al. Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE. Plant Physiol., 2015. 169(3): p. 2187-99 [PMID:26417007] Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis. Dev. Cell, 2016. 39(2): p. 198-208 [PMID:27666746] Sehra B,Franks RG Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development. Front Plant Sci, 2017. 8: p. 1712 [PMID:29085379] Simonini S,Stephenson P,Østergaard L A molecular framework controlling style morphology in Brassicaceae. Development, 2018. [PMID:29440299]