PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g002380.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 598aa    MW: 66984.3 Da    PI: 7.1489
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g002380.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.4e-18122168148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde l +av ++ g++Wk+Ia+ ++  Rt+ qc +rwqk+l
   Csa20g002380.1 122 KGGWTPEEDETLRRAVDKYKGKRWKKIAEFFP-DRTEVQCLHRWQKVL 168
                      688*****************************.************986 PP
2Myb_DNA-binding60.92.7e-19174220148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+++v++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
   Csa20g002380.1 174 KGPWTKEEDDKIVELVQKYGPAKWSVIAKSLP-GRIGKQCRERWHNHL 220
                      79******************************.*************97 PP
3Myb_DNA-binding51.91.8e-16226269146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT eE+  l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++
   Csa20g002380.1 226 KDAWTVEEESALMNAHRVYGNK-WAEIAKVLP-GRTDNAIKNHWNS 269
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.827117168IPR017930Myb domain
SMARTSM007173.0E-16121170IPR001005SANT/Myb domain
PfamPF002492.4E-16122168IPR001005SANT/Myb domain
SuperFamilySSF466894.31E-16123178IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-23124175IPR009057Homeodomain-like
CDDcd001671.65E-14125168No hitNo description
PROSITE profilePS5129431.049169224IPR017930Myb domain
SuperFamilySSF466893.44E-32171267IPR009057Homeodomain-like
SMARTSM007172.9E-18173222IPR001005SANT/Myb domain
PfamPF002492.4E-18174220IPR001005SANT/Myb domain
CDDcd001671.35E-15176220No hitNo description
Gene3DG3DSA:1.10.10.603.0E-27176223IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-23224275IPR009057Homeodomain-like
PROSITE profilePS5129422.516225275IPR017930Myb domain
SMARTSM007177.4E-16225273IPR001005SANT/Myb domain
PfamPF002491.3E-14226269IPR001005SANT/Myb domain
CDDcd001674.94E-12228271No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
LSFSPLVSLL SSLSLSFNGQ SFFRIKFSFF FSSNVTLFLF FFVFLTNSPI SMSFSSIPAA  60
CSPVKEEVSE IQCMENKQPL AAPCSSASEG SGCFFLKSPE IATPATASPT PRRTSGPMRR  120
AKGGWTPEED ETLRRAVDKY KGKRWKKIAE FFPDRTEVQC LHRWQKVLNP ELIKGPWTKE  180
EDDKIVELVQ KYGPAKWSVI AKSLPGRIGK QCRERWHNHL NPDIRKDAWT VEEESALMNA  240
HRVYGNKWAE IAKVLPGRTD NAIKNHWNSS LKKKLEFYLA TGNLPPTATK FCLLNDNADG  300
DRDSKQSSGT KPFKDSDSVT QTSSGDTDSN EVGRDHFDAS SALLEEVAAT RRISVNEYAR  360
SPVEYKPQLP NLEPVPEDVR INSKAYYERS IQRKEENVFG TPKHGNLYYK SPLDYYFPSE  420
ADLQRMYRYE CGCSPVAESP VVAESPVGLI TPPCNKDSGL AATRSPESFL RQAARTFPNT  480
PSIFRKRRKV VLAAKTDDDV VSVGVKEADH KEESKDSSDI SPAGGESLML ETTDDCRDDE  540
KLESNGNVFN VSPPYRLRAK RTAVIKSRQL EFTTAKEKQP DDETETSELA SEEDKPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-741212755159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-741212755159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g002380.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196490.0AY519649.1 Arabidopsis thaliana MYB transcription factor (At5g02320) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010490651.10.0PREDICTED: uncharacterized protein LOC104768396
SwissprotQ6R0320.0MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLR0FDT20.0R0FDT2_9BRAS; Uncharacterized protein
STRINGXP_010490651.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.20.0myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]